Stem-loop bta-mir-219-1

Accession

MI0009781

Description

Bos taurus bta-mir-219-1 precursor miRNA

Literature search

7 open access papers mention bta-mir-219-1
(11 sentences)

Sequence

42788 reads, 150.0 reads per million, 243 experiments

acucaggagcuucgccacUGAUUGUCCAAACGCAAUUCUUGUacgagucugcggccaaccgAGAAUUGUGGCUGGACAUCUGUggcugagcucugg
.....(((((((.(((((.(((.(((((..(((((((((((...(.(((...))))...)))))))))))..)))))))).))))).)))))))..

Structure

acuca       c     U   U     AA           Uac a   u 
     ggagcuu gccac GAU GUCCA  CGCAAUUCUUG   g guc  
     ||||||| ||||| ||| |||||  |||||||||||   | ||| g
     ucucgag cggUG CUA CAGGU  GUGUUAAGAgc   c cgg  
---gg       u     U   -     CG           caa -   c 

Annotation confidence High

Genome context

11: 98985275-98985370 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-219-1

Mature bta-miR-219-1-5p

• Accession: MIMAT0030444
• Description: Bos taurus bta-miR-219-1-5p mature miRNA
• Sequence: 19 - UGAUUGUCCAAACGCAAUUCUUGU - 42
• Evidence: experimental ; Illumina [1]

Mature bta-miR-219-1-3p

• Accession: MIMAT0012547
• Description: Bos taurus bta-miR-219-1-3p mature miRNA
• Sequence: 62 - AGAAUUGUGGCUGGACAUCUGU - 83
• Evidence: experimental ; cloned [3-4]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


4. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125