Annotation of 390 bovine miRNA genes by sequence similarity with other species |
|
|---|---|
| PubMed ID | 18945293 |
| Authors | "Strozzi F, Mazza R, Malinverni R, Williams JL" |
| Journal | "Anim Genet |
| Volume | 40 |
| Pages | 125 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| bta-mir-1-2 | MI0009718 | 574 | 24 | 34453372 | 34453456 | + | High |
| bta-mir-1-1 | MI0009719 | 574 | 13 | 54745908 | 54745983 | - | High |
| bta-mir-100 | MI0009720 | 673 | 15 | 32818528 | 32818603 | - | High |
| bta-mir-101-1 | MI0009721 | 1082 | 3 | 80335436 | 80335518 | + | High |
| bta-mir-105b | MI0009722 | 5 | X | 34769258 | 34769337 | - | High |
| bta-mir-105a | MI0009723 | 10 | X | 34766804 | 34766884 | - | High |
| bta-mir-106b | MI0009724 | 247 | 25 | 36355563 | 36355642 | + | High |
| bta-mir-124a-2 | MI0009725 | 13 | 14 | 29124356 | 29124466 | + | High |
| bta-mir-124b | MI0009726 | 13 | 13 | 54355340 | 54355426 | - | High |
| bta-mir-128b | MI0009727 | 182 | 22 | 9705215 | 9705298 | + | High |
| bta-mir-129-1 | MI0009728 | 67 | 4 | 92407943 | 92408014 | + | High |
| bta-mir-129-2 | MI0009729 | 70 | 15 | 73674100 | 73674193 | + | High |
| bta-mir-130a | MI0009730 | 398 | 15 | 80888253 | 80888341 | + | High |
| bta-mir-130b | MI0009731 | 140 | 17 | 72108892 | 72108973 | - | High |
| bta-mir-133a-2 | MI0009732 | 327 | 24 | 34456691 | 34456777 | + | High |
| bta-mir-133a-1 | MI0009733 | 326 | 13 | 54735656 | 54735750 | - | High |
| bta-mir-133b | MI0009734 | 15 | 23 | 24571304 | 24571387 | + | High |
| bta-mir-134 | MI0009735 | 12 | 21 | 65943904 | 65943976 | + | High |
| bta-mir-135a-2 | MI0009736 | 10 | 5 | 61775955 | 61776054 | + | High |
| bta-mir-135a-1 | MI0009737 | 13 | 22 | 48588901 | 48588990 | + | High |
| bta-mir-135b | MI0009738 | 3 | 16 | 3197434 | 3197528 | - | High |
| bta-mir-136 | MI0009739 | 406 | 21 | 65782365 | 65782456 | + | High |
| bta-mir-137 | MI0009740 | 9 | 3 | 45241090 | 45241191 | + | - |
| bta-mir-138-1 | MI0009741 | 44 | 22 | 16003758 | 16003854 | + | High |
| bta-mir-141 | MI0009742 | 5793 | 5 | 103498826 | 103498915 | - | High |
| bta-mir-143 | MI0009743 | 223303 | 7 | 60812121 | 60812221 | + | High |
| bta-mir-144 | MI0009744 | 30 | 19 | 20238687 | 20238770 | - | High |
| bta-mir-146b | MI0009745 | 361 | 26 | 23057605 | 23057710 | + | High |
| bta-mir-146a | MI0009746 | 926 | 7 | 72071548 | 72071646 | + | High |
| bta-mir-147 | MI0009747 | 86 | 10 | 65015857 | 65015936 | - | High |
| bta-mir-152 | MI0009748 | 219 | 19 | 38444475 | 38444560 | + | High |
| bta-mir-153-1 | MI0009749 | 14 | 2 | 107240951 | 107241040 | - | High |
| bta-mir-153-2 | MI0009750 | 16 | 4 | 118753582 | 118753668 | - | High |
| bta-mir-154a | MI0009751 | 10 | 21 | 65948686 | 65948769 | + | High |
| bta-mir-155 | MI0009752 | 184 | 1 | 10848650 | 10848712 | - | High |
| bta-mir-16a | MI0009753 | 574 | 12 | 19500915 | 19501003 | - | High |
| bta-mir-181d | MI0009754 | 44 | 7 | 11811275 | 11811387 | - | High |
| bta-mir-182 | MI0009755 | 1309 | 4 | 93591424 | 93591534 | - | High |
| bta-mir-183 | MI0009756 | 126 | 4 | 93596158 | 93596227 | - | High |
| bta-mir-184 | MI0009757 | 131 | 21 | 25438414 | 25438496 | + | - |
| bta-mir-185 | MI0009758 | 348 | 17 | 72954593 | 72954671 | + | High |
| bta-mir-187 | MI0009759 | 5 | 24 | 21219284 | 21219392 | + | High |
| bta-mir-188 | MI0009760 | 10 | X | 87725056 | 87725141 | + | High |
| bta-mir-24-1 | MI0009761 | 551 | 8 | 81617794 | 81617861 | + | High |
| bta-mir-190a | MI0009762 | 22 | 10 | 47265558 | 47265642 | - | High |
| bta-mir-190b | MI0009763 | 5 | 3 | 16316832 | 16316910 | + | - |
| bta-mir-193b | MI0009764 | 283 | 25 | 13248833 | 13248915 | + | High |
| bta-mir-194a-2 | MI0009765 | 4433 | 29 | 43114571 | 43114653 | - | High |
| bta-mir-196a-2 | MI0009766 | 96 | 5 | 26040793 | 26040877 | - | High |
| bta-mir-196a-1 | MI0009767 | 118 | 19 | 37860865 | 37860966 | + | High |
| bta-mir-196b | MI0009768 | 201 | 4 | 68873154 | 68873238 | + | High |
| bta-mir-197 | MI0009769 | 111 | 3 | 33850276 | 33850356 | - | High |
| bta-mir-199a-2 | MI0009770 | 3202 | 7 | 15283412 | 15283482 | - | High |
| bta-mir-202 | MI0009771 | 1 | 26 | 25761610 | 25761708 | + | High |
| bta-mir-206 | MI0009772 | 65 | 23 | 24567204 | 24567289 | + | - |
| bta-mir-208a | MI0009773 | 0 | 10 | 21534418 | 21534488 | + | High |
| bta-mir-208b | MI0009774 | 2 | 10 | 21505515 | 21505591 | + | High |
| bta-mir-211 | MI0009775 | 29 | 21 | 27536498 | 27536607 | - | - |
| bta-mir-212 | MI0009776 | 30 | 19 | 23071137 | 23071247 | - | High |
| bta-mir-216a | MI0009777 | 10 | 11 | 38640690 | 38640798 | - | High |
| bta-mir-216b | MI0009778 | 7 | 11 | 38657082 | 38657163 | - | High |
| bta-mir-217 | MI0009779 | 10 | 11 | 38628452 | 38628561 | - | High |
| bta-mir-218-1 | MI0009780 | 65 | 6 | 40087130 | 40087239 | + | Medium |
| bta-mir-219-1 | MI0009781 | 3 | 11 | 98985275 | 98985370 | - | High |
| bta-mir-223 | MI0009782 | 722 | X | 94562822 | 94562929 | - | High |
| bta-mir-224 | MI0009783 | 169 | X | 34446937 | 34447017 | - | High |
| bta-mir-26a-1 | MI0009784 | 21970 | 22 | 11420440 | 11420529 | + | High |
| bta-mir-28 | MI0009785 | 1738 | 1 | 78661458 | 78661543 | - | High |
| bta-mir-296 | MI0009786 | 62 | 13 | 57550926 | 57551003 | + | High |
| bta-mir-299 | MI0009787 | 40 | 21 | 65914207 | 65914269 | + | High |
| bta-mir-29d | MI0009788 | 302 | 16 | 75660913 | 75661000 | + | High |
| bta-mir-301a | MI0009789 | 341 | 19 | 10121293 | 10121377 | - | High |
| bta-mir-301b | MI0009790 | 30 | 17 | 72109203 | 72109297 | - | High |
| bta-mir-302a | MI0009791 | 0 | 6 | 12980768 | 12980837 | + | High |
| bta-mir-302d | MI0009792 | 0 | 6 | 12980945 | 12981014 | + | High |
| bta-mir-302b | MI0009793 | 1 | 6 | 12980214 | 12980288 | + | High |
| bta-mir-302c | MI0009794 | 0 | 6 | 12980357 | 12980424 | + | High |
| bta-mir-30f | MI0009795 | 368 | 9 | 10494819 | 10494902 | - | High |
| bta-mir-32 | MI0009796 | 138 | 8 | 98629023 | 98629092 | - | High |
| bta-mir-323a | MI0009797 | 7 | 21 | 65916105 | 65916190 | + | High |
| bta-mir-324 | MI0009798 | 26 | 19 | 26938003 | 26938091 | - | High |
| bta-mir-326 | MI0009799 | 14 | 15 | 54537265 | 54537359 | - | High |
| bta-mir-328 | MI0009800 | 23 | 18 | 34837717 | 34837808 | - | Medium |
| bta-mir-329a | MI0009801 | 9 | 21 | 65917454 | 65917536 | + | High |
| bta-mir-329b | MI0009802 | 13 | 21 | 65917144 | 65917226 | + | High |
| bta-mir-330 | MI0009803 | 52 | 18 | 53226503 | 53226596 | - | High |
| bta-mir-335 | MI0009804 | 104 | 4 | 94255083 | 94255174 | + | High |
| bta-mir-338 | MI0009805 | 105 | 19 | 51569617 | 51569708 | + | High |
| bta-mir-339a | MI0009806 | 305 | 25 | 41736134 | 41736211 | + | High |
| bta-mir-33a | MI0009807 | 65 | 5 | 112884574 | 112884642 | + | High |
| bta-mir-33b | MI0009808 | 45 | 19 | 34647548 | 34647641 | + | High |
| bta-mir-340 | MI0009809 | 252 | 7 | 1249024 | 1249118 | + | High |
| bta-mir-346 | MI0009810 | 8 | 28 | 41000073 | 41000167 | - | High |
| bta-mir-362 | MI0009811 | 43 | X | 87736670 | 87736734 | + | High |
| bta-mir-365-2 | MI0009812 | 137 | 19 | 18461502 | 18461612 | - | High |
| bta-mir-367 | MI0009813 | 1 | 6 | 12981071 | 12981138 | + | - |
| bta-mir-370 | MI0009814 | 21 | 21 | 65808184 | 65808258 | + | High |
| bta-mir-371 | MI0009815 | 4 | 18 | 60903171 | 60903249 | + | High |
| bta-mir-374b | MI0009816 | 112 | X | 76925407 | 76925501 | + | Medium |
| bta-mir-375 | MI0009817 | 1613 | 2 | 106945887 | 106945950 | - | High |
| bta-mir-377 | MI0009818 | 11 | 21 | 65951137 | 65951205 | + | High |
| bta-mir-378-1 | MI0009819 | 4644 | 7 | 61076253 | 61076318 | + | High |
| bta-mir-379 | MI0009820 | 43 | 21 | 65912508 | 65912593 | + | High |
| bta-mir-381 | MI0009821 | 186 | 21 | 65933708 | 65933782 | + | High |
| bta-mir-382 | MI0009822 | 30 | 21 | 65943525 | 65943600 | + | High |
| bta-mir-383 | MI0009823 | 10 | 27 | 22249018 | 22249090 | + | High |
| bta-mir-409a | MI0009824 | 378 | 21 | 65953893 | 65953971 | + | High |
| bta-mir-410 | MI0009825 | 224 | 21 | 65954512 | 65954592 | + | High |
| bta-mir-411a | MI0009826 | 2437 | 21 | 65913735 | 65913816 | + | High |
| bta-mir-412 | MI0009827 | 19 | 21 | 65954035 | 65954124 | + | High |
| bta-mir-421 | MI0009828 | 115 | X | 76925575 | 76925659 | + | High |
| bta-mir-429 | MI0009829 | 551 | 16 | 51321445 | 51321528 | - | High |
| bta-mir-431 | MI0009830 | 18 | 21 | 65778717 | 65778830 | + | High |
| bta-mir-432 | MI0009831 | 47 | 21 | 65782181 | 65782270 | + | High |
| bta-mir-433 | MI0009832 | 10 | 21 | 65779595 | 65779696 | + | High |
| bta-mir-448 | MI0009833 | None | X | 63159355 | 63159465 | + | - |
| bta-mir-449a | MI0009834 | 17 | 20 | 23943316 | 23943403 | + | High |
| bta-mir-449b | MI0009835 | 10 | 20 | 23943192 | 23943289 | + | High |
| bta-mir-449c | MI0009836 | 11 | 20 | 23941699 | 23941804 | + | - |
| bta-mir-451 | MI0009837 | 80 | 19 | 20238525 | 20238595 | - | High |
| bta-mir-452 | MI0009838 | 411 | X | 34447971 | 34448055 | - | High |
| bta-mir-453 | MI0009839 | None | 21 | 65945333 | 65945412 | + | - |
| bta-mir-454 | MI0009840 | 44 | 19 | 10111632 | 10111745 | - | High |
| bta-mir-483 | MI0009841 | 18 | 29 | 49418343 | 49418410 | + | High |
| bta-mir-485 | MI0009842 | 12 | 21 | 65944602 | 65944674 | + | High |
| bta-mir-486 | MI0009843 | 516 | 27 | 36572754 | 36572877 | - | High |
| bta-mir-488 | MI0009844 | 2 | 16 | 58247500 | 58247595 | - | - |
| bta-mir-490 | MI0009845 | 96 | 4 | 100636672 | 100636798 | + | High |
| bta-mir-491 | MI0009846 | 12 | 8 | 23698530 | 23698613 | - | High |
| bta-mir-493 | MI0009847 | 68 | 21 | 65766680 | 65766768 | + | High |
| bta-mir-494 | MI0009848 | 22 | 21 | 65920313 | 65920397 | + | High |
| bta-mir-495 | MI0009849 | 21 | 21 | 65923874 | 65923954 | + | High |
| bta-mir-496 | MI0009850 | 3 | 21 | 65949516 | 65949616 | + | High |
| bta-mir-500 | MI0009851 | 289 | X | 87737926 | 87738009 | + | High |
| bta-mir-502a-1 | MI0009852 | 126 | X | 87742024 | 87742108 | + | High |
| bta-mir-502a-2 | MI0009853 | 125 | X | 87732047 | 87732136 | + | - |
| bta-mir-502b | MI0009854 | 61 | X | 87736180 | 87736262 | + | High |
| bta-mir-504 | MI0009855 | 51 | gb|NKLS02002208.1| | 6428209 | 6428291 | + | High |
| bta-mir-505 | MI0009856 | 48 | gb|NKLS02002208.1| | 5196458 | 5196547 | + | High |
| bta-mir-539 | MI0009857 | 19 | 21 | 65935007 | 65935084 | + | High |
| bta-mir-541 | MI0009858 | 23 | 21 | 65952991 | 65953074 | + | High |
| bta-mir-543 | MI0009859 | 10 | 21 | 65922464 | 65922543 | + | High |
| bta-mir-544b-1 | MI0009860 | 0 | 13 | 70043643 | 70043727 | + | - |
| bta-mir-544b-2 | MI0009861 | 0 | 24 | 35221931 | 35222022 | - | - |
| bta-mir-544a | MI0009862 | 8 | 21 | 65937005 | 65937095 | + | High |
| bta-mir-551a | MI0009863 | 0 | 16 | 49472683 | 49472777 | + | - |
| bta-mir-551b | MI0009864 | 1 | 1 | 98873841 | 98873935 | - | High |
| bta-mir-562 | MI0009865 | 1 | 25 | 13697719 | 13697800 | - | - |
| bta-mir-568 | MI0009866 | 0 | chr1 | 59568869 | 59568962 | - | - |
| bta-mir-582 | MI0009867 | 34 | 20 | 19584382 | 19584479 | + | High |
| bta-mir-584-2 | MI0009868 | 0 | 19 | 36241834 | 36241922 | + | - |
| bta-mir-584-3 | MI0009869 | 0 | 28 | 30679777 | 30679861 | + | - |
| bta-mir-584-4 | MI0009870 | 0 | 22 | 35566748 | 35566823 | + | - |
| bta-mir-584-5 | MI0009871 | 0 | 4 | 9736854 | 9736948 | - | - |
| bta-mir-584-6 | MI0009872 | 0 | 20 | 6324092 | 6324167 | - | - |
| bta-mir-584-7 | MI0009873 | 0 | 29 | 36735737 | 36735803 | + | - |
| bta-mir-584-1 | MI0009874 | 0 | 14 | 67019700 | 67019775 | + | - |
| bta-mir-592 | MI0009875 | 4 | 4 | 91320600 | 91320695 | - | - |
| bta-mir-599 | MI0009876 | 0 | 14 | 64795492 | 64795586 | + | - |
| bta-mir-615 | MI0009877 | 25 | 5 | 25998827 | 25998919 | - | High |
| bta-mir-628 | MI0009878 | 21 | 10 | 54959645 | 54959739 | + | High |
| bta-mir-631 | MI0009879 | None | 21 | 33466498 | 33466572 | + | - |
| bta-mir-653 | MI0009880 | 2 | 4 | 10822201 | 10822290 | - | High |
| bta-mir-654 | MI0009881 | 17 | 21 | 65929475 | 65929555 | + | High |
| bta-mir-655 | MI0009882 | 15 | 21 | 65937962 | 65938058 | + | High |
| bta-mir-656 | MI0009883 | 2 | 21 | 65955335 | 65955413 | + | High |
| bta-mir-658 | MI0009884 | 0 | 5 | 109653907 | 109654006 | - | - |
| bta-mir-665 | MI0009885 | 27 | 21 | 65774396 | 65774467 | + | High |
| bta-mir-670 | MI0009886 | 8 | 15 | 73648217 | 73648315 | + | - |
| bta-mir-671 | MI0009887 | 40 | 4 | 113815894 | 113816011 | + | High |
| bta-mir-708 | MI0009889 | 153 | 29 | 16596062 | 16596170 | + | High |
| bta-mir-744 | MI0009891 | 72 | 19 | 30697356 | 30697455 | + | High |
| bta-mir-758 | MI0009892 | 2 | 21 | 65916403 | 65916490 | + | High |
| bta-mir-759 | MI0009893 | None | 12 | 10951855 | 10951950 | - | - |
| bta-mir-760 | MI0009894 | 55 | 3 | 49637554 | 49637670 | - | High |
| bta-mir-761 | MI0009895 | None | 3 | 94462220 | 94462295 | + | - |
| bta-mir-763 | MI0009896 | 0 | 5 | 47929780 | 47929899 | - | - |
| bta-mir-767 | MI0009897 | 13 | X | 34768321 | 34768425 | - | High |
| bta-mir-769 | MI0009898 | 161 | 18 | 53513498 | 53513616 | + | High |
| bta-mir-873 | MI0009899 | 6 | 8 | 15215599 | 15215675 | + | High |
| bta-mir-874 | MI0009900 | 48 | 7 | 49091396 | 49091471 | - | High |
| bta-mir-875 | MI0009901 | 0 | 14 | 64795360 | 64795436 | + | - |
| bta-mir-876 | MI0009902 | 2 | 8 | 15239262 | 15239342 | + | Medium |
| bta-mir-877 | MI0009903 | 49 | 23 | 28399539 | 28399640 | - | High |
| bta-mir-885 | MI0009904 | 97 | 22 | 54438290 | 54438363 | - | High |
| bta-mir-92a-1 | MI0009905 | 5255 | 12 | 65690118 | 65690195 | + | High |
| bta-mir-92b | MI0009906 | 396 | 3 | 15425799 | 15425894 | - | High |
| bta-mir-935 | MI0009908 | 2 | 18 | 61651395 | 61651485 | + | - |
| bta-mir-940 | MI0009909 | 1 | 25 | 1790895 | 1790987 | + | - |
| bta-mir-95 | MI0009910 | 18 | 6 | 114336289 | 114336369 | - | - |
| bta-mir-96 | MI0009911 | 130 | 4 | 93595920 | 93596022 | - | High |
| bta-mir-9-1 | MI0009912 | 179 | 21 | 20839127 | 20839216 | + | High |
| bta-mir-9-2 | MI0009913 | 179 | 7 | 88196006 | 88196092 | - | High |
| bta-mir-1225 | MI0010452 | 3 | chr25 | 1638363 | 1638455 | - | Medium |
| bta-mir-584-8 | MI0010453 | 0 | Y | 6037658 | 6037745 | - | - |
| bta-mir-29e | MI0010454 | 287 | 16 | 75577046 | 75577126 | + | High |
| bta-mir-1282 | MI0010455 | None | 21 | 55414001 | 55414101 | - | - |
| bta-mir-1284 | MI0010456 | None | 22 | 30102728 | 30102845 | + | - |
| bta-mir-376a | MI0010457 | 34 | 21 | 65930057 | 65930155 | + | High |
| bta-mir-1291 | MI0010458 | 10 | chr5 | 31345647 | 31345720 | + | Low |
| bta-mir-1179 | MI0010459 | 1 | 21 | 19578835 | 19578924 | + | - |
| bta-mir-1301 | MI0010460 | 0 | 11 | 73985189 | 73985268 | + | - |
| bta-mir-7-2 | MI0010462 | 181 | 8 | 77219242 | 77219350 | - | High |
| bta-mir-1256 | MI0010463 | 0 | 12 | 57177663 | 57177744 | - | - |
| bta-mir-29b-1 | MI0010464 | 359 | 4 | 94636842 | 94636922 | - | High |
| bta-mir-1835 | MI0010465 | 0 | 5 | 75672810 | 75672872 | - | - |
| bta-mir-1281 | MI0010466 | 0 | 5 | 112281694 | 112281747 | + | - |
| bta-mir-1251 | MI0010467 | None | 5 | 61701393 | 61701462 | + | - |
| bta-mir-1296 | MI0010468 | 129 | 28 | 19489842 | 19489932 | - | High |
| bta-mir-1193 | MI0010469 | 1 | 21 | 65920645 | 65920749 | + | - |
| bta-mir-1197 | MI0010470 | 6 | 21 | 65915936 | 65916032 | + | Medium |
| bta-mir-7-1 | MI0010471 | 99 | 21 | 19582936 | 19583033 | + | High |
| bta-mir-1839 | MI0010473 | 210 | 14 | 691785 | 691856 | - | High |
| bta-mir-1307 | MI0010474 | 593 | 26 | 23985830 | 23985978 | - | High |
| bta-mir-1298 | MI0010475 | 4 | X | 63075806 | 63075913 | + | High |
| bta-mir-1287 | MI0010476 | None | 26 | 19476968 | 19477058 | - | - |
| bta-mir-1248-1 | MI0010477 | 13 | chr1 | 81349834 | 81349938 | - | Low |
| bta-mir-1185 | MI0010478 | 15 | 21 | 65932006 | 65932091 | + | High |
| bta-mir-1306 | MI0010479 | 89 | 17 | 72976116 | 72976175 | + | High |
| bta-mir-1271 | MI0010480 | 38 | 7 | 37843326 | 37843411 | + | High |
| bta-mir-1249 | MI0010481 | 22 | 5 | 115620092 | 115620156 | - | High |
| bta-mir-1248-2 | MI0010483 | 13 | chr10 | 58304556 | 58304660 | + | Low |
| bta-mir-181a-1 | MI0010484 | 8643 | 16 | 77762836 | 77762945 | - | High |
| bta-mir-181b-1 | MI0010485 | 463 | 16 | 77762664 | 77762773 | - | High |