Stem-loop bta-mir-335

Accession

MI0009804

Description

Bos taurus bta-mir-335 precursor miRNA

Literature search

96 open access papers mention bta-mir-335
(368 sentences)

Sequence

219015 reads, 151.0 reads per million, 315 experiments

uuuugggcgggggUCAAGAGCAAUAACGAAAAAUGUuugucauaaaccgUUUUUCAUUAUUGCUCCUGACCUccucucauuugcuguacuca
...((((.((((((((.(((((((((.((((((((.((......)).)))))))).))))))))).)))))))).)))).............

Structure

----------uuu    c        A         C        U  gu 
             uggg gggggUCA GAGCAAUAA GAAAAAUG uu  c
             |||| |||||||| ||||||||| |||||||| ||   
             acuc ccUCCAGU CUCGUUAUU CUUUUUgc aa  a
acucaugucguuu    u        C         A        c  au 

Annotation confidence High

Genome context

4: 94255083-94255174 [+]

Mature bta-miR-335-5p

• Accession: MIMAT0009291
• Description: Bos taurus bta-miR-335-5p mature miRNA
• Sequence: 14 - UCAAGAGCAAUAACGAAAAAUGU - 36
• Evidence: experimental ; cloned [3]

Mature bta-miR-335-3p

• Accession: MIMAT0061003
• Description: Bos taurus bta-miR-335-3p mature miRNA
• Sequence: 50 - UUUUUCAUUAUUGCUCCUGACCU - 72
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125