Stem-loop bta-mir-654

Accession

MI0009881

Description

Bos taurus bta-mir-654 precursor miRNA

Literature search

16 open access papers mention bta-mir-654
(55 sentences)

Sequence

42445 reads, 20.0 reads per million, 301 experiments

ggguuaguggaaaggUGGUGGGCUGCAGAACAUGUGCUuccuucgugucaUAUGUCUGCUGACCAUCACCUUuagaagccc
(((((.....(((((((((((...(((((.(((((((.........).)))))))))))...)))))))))))...)))))

Structure

     agugg           GCU     A      - Uuc 
ggguu     aaaggUGGUGG   GCAGA CAUGUG C   c
|||||     |||||||||||   ||||| |||||| |   u
cccga     uUUCCACUACC   CGUCU GUAUac g   u
     --aga           AGU     -      u ugc 

Annotation confidence High

Genome context

21: 65929475-65929555 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from bta-mir-654

Mature bta-miR-654-5p

• Accession: MIMAT0050882
• Description: Bos taurus bta-miR-654-5p mature miRNA
• Sequence: 16 - UGGUGGGCUGCAGAACAUGUGCU - 38
• Evidence: not_experimental

Mature bta-miR-654-3p

• Accession: MIMAT0009359
• Description: Bos taurus bta-miR-654-3p mature miRNA
• Sequence: 51 - UAUGUCUGCUGACCAUCACCUU - 72
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125