Stem-loop bta-mir-375

Accession

MI0009817

Description

Bos taurus bta-mir-375 precursor miRNA mir-375

Gene
family

RF00700; mir-375

Literature search

142 open access papers mention bta-mir-375
(996 sentences)

Sequence

796659 reads, 1548.0 reads per million, 316 experiments

ccccGCGACGAGCCCCUCGCACAAACCggaccugagcgUUUUGUUCGUUCGGCUCGCGUGAggc
.((((((.((((((...((.(((((.((........)).))))).))...)))))))))).)).

Structure

c  -    A      CCU  C     C  gac 
 cc cGCG CGAGCC   CG ACAAA Cg   c
 || |||| ||||||   || ||||| ||    
 gg GUGC GCUCGG   GC UGUUU gc   u
c  A    -      CUU  U     U  gag 

Annotation confidence High

Genome context

2: 106945887-106945950 [-]

Mature bta-miR-375-5p

• Accession: MIMAT0050859
• Description: Bos taurus bta-miR-375-5p mature miRNA
• Sequence: 5 - GCGACGAGCCCCUCGCACAAACC - 27
• Evidence: experimental ; Array [3], qRT-PCR [3], cloned [4]

Mature bta-miR-375-3p

• Accession: MIMAT0009303
• Description: Bos taurus bta-miR-375-3p mature miRNA
• Sequence: 39 - UUUUGUUCGUUCGGCUCGCGUGA - 61
• Evidence: experimental ; Array [3], qRT-PCR [3], cloned [4]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


4. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125