miRBase entry: 19758457

Characterization of bovine miRNAs by sequencing and bioinformatics analysis

PubMed ID 19758457
Authors Jin W, Grant JR, Stothard P, Moore SS, Guan LL
Journal BMC Mol Biol
Volume 10
Pages 90

There are 223 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
bta-mir-199a-1 MI0004758 3207 16 39625344 39625447 - High
bta-mir-124a-1 MI0005027 13 8 9301909 9301993 + High
bta-let-7b MI0005453 4232 5 116409210 116409290 + High
bta-mir-1-2 MI0009718 574 24 34453372 34453456 + High
bta-mir-1-1 MI0009719 574 13 54745908 54745983 - High
bta-mir-100 MI0009720 673 15 32818528 32818603 - High
bta-mir-101-1 MI0009721 1082 3 80335436 80335518 + High
bta-mir-106b MI0009724 247 25 36355563 36355642 + High
bta-mir-124a-2 MI0009725 13 14 29124356 29124466 + High
bta-mir-128b MI0009727 182 22 9705215 9705298 + High
bta-mir-129-1 MI0009728 67 4 92407943 92408014 + High
bta-mir-129-2 MI0009729 70 15 73674100 73674193 + High
bta-mir-130a MI0009730 398 15 80888253 80888341 + High
bta-mir-133a-2 MI0009732 327 24 34456691 34456777 + High
bta-mir-133a-1 MI0009733 326 13 54735656 54735750 - High
bta-mir-133b MI0009734 15 23 24571304 24571387 + High
bta-mir-138-1 MI0009741 44 22 16003758 16003854 + High
bta-mir-143 MI0009743 223303 7 60812121 60812221 + High
bta-mir-144 MI0009744 30 19 20238687 20238770 - High
bta-mir-152 MI0009748 219 19 38444475 38444560 + High
bta-mir-16a MI0009753 574 12 19500915 19501003 - High
bta-mir-24-1 MI0009761 551 8 81617794 81617861 + High
bta-mir-193b MI0009764 283 25 13248833 13248915 + High
bta-mir-194a-2 MI0009765 4433 29 43114571 43114653 - High
bta-mir-197 MI0009769 111 3 33850276 33850356 - High
bta-mir-206 MI0009772 65 23 24567204 24567289 + -
bta-mir-218-1 MI0009780 65 6 40087130 40087239 + Medium
bta-mir-219-1 MI0009781 3 11 98985275 98985370 - High
bta-mir-223 MI0009782 722 X 94562822 94562929 - High
bta-mir-224 MI0009783 169 X 34446937 34447017 - High
bta-mir-26a-1 MI0009784 21970 22 11420440 11420529 + High
bta-mir-28 MI0009785 1738 1 78661458 78661543 - High
bta-mir-299 MI0009787 40 21 65914207 65914269 + High
bta-mir-29d MI0009788 302 16 75660913 75661000 + High
bta-mir-30f MI0009795 368 9 10494819 10494902 - High
bta-mir-32 MI0009796 138 8 98629023 98629092 - High
bta-mir-323a MI0009797 7 21 65916105 65916190 + High
bta-mir-324 MI0009798 26 19 26938003 26938091 - High
bta-mir-329b MI0009802 13 21 65917144 65917226 + High
bta-mir-338 MI0009805 105 19 51569617 51569708 + High
bta-mir-339a MI0009806 305 25 41736134 41736211 + High
bta-mir-340 MI0009809 252 7 1249024 1249118 + High
bta-mir-362 MI0009811 43 X 87736670 87736734 + High
bta-mir-365-2 MI0009812 137 19 18461502 18461612 - High
bta-mir-374b MI0009816 112 X 76925407 76925501 + Medium
bta-mir-375 MI0009817 1613 2 106945887 106945950 - High
bta-mir-378-1 MI0009819 4644 7 61076253 61076318 + High
bta-mir-382 MI0009822 30 21 65943525 65943600 + High
bta-mir-409a MI0009824 378 21 65953893 65953971 + High
bta-mir-411a MI0009826 2437 21 65913735 65913816 + High
bta-mir-429 MI0009829 551 16 51321445 51321528 - High
bta-mir-433 MI0009832 10 21 65779595 65779696 + High
bta-mir-451 MI0009837 80 19 20238525 20238595 - High
bta-mir-452 MI0009838 411 X 34447971 34448055 - High
bta-mir-485 MI0009842 12 21 65944602 65944674 + High
bta-mir-486 MI0009843 516 27 36572754 36572877 - High
bta-mir-494 MI0009848 22 21 65920313 65920397 + High
bta-mir-495 MI0009849 21 21 65923874 65923954 + High
bta-mir-500 MI0009851 289 X 87737926 87738009 + High
bta-mir-504 MI0009855 51 gb|NKLS02002208.1| 6428209 6428291 + High
bta-mir-505 MI0009856 48 gb|NKLS02002208.1| 5196458 5196547 + High
bta-mir-539 MI0009857 19 21 65935007 65935084 + High
bta-mir-551b MI0009864 1 1 98873841 98873935 - High
bta-mir-592 MI0009875 4 4 91320600 91320695 - -
bta-mir-874 MI0009900 48 7 49091396 49091471 - High
bta-mir-885 MI0009904 97 22 54438290 54438363 - High
bta-mir-92a-1 MI0009905 5255 12 65690118 65690195 + High
bta-mir-92b MI0009906 396 3 15425799 15425894 - High
bta-mir-9-1 MI0009912 179 21 20839127 20839216 + High
bta-mir-9-2 MI0009913 179 7 88196006 88196092 - High
bta-mir-1224 MI0010443 7 1 82934066 82934151 - High
bta-mir-376b MI0010444 20 21 65929698 65929790 + High
bta-mir-376c MI0010446 18 21 65928948 65929033 + High
bta-mir-7-2 MI0010462 181 8 77219242 77219350 - High
bta-mir-29b-1 MI0010464 359 4 94636842 94636922 - High
bta-mir-7-1 MI0010471 99 21 19582936 19583033 + High
bta-mir-1185 MI0010478 15 21 65932006 65932091 + High
bta-mir-181a-1 MI0010484 8643 16 77762836 77762945 - High
bta-mir-181b-1 MI0010485 463 16 77762664 77762773 - High
bta-mir-1388 MI0012206 137 13 53904024 53904115 + High
bta-mir-1468 MI0012207 580 X 96454651 96454747 + High
bta-mir-194a-1 MI0012208 5679 16 23607933 23608029 - High
bta-mir-19b-2 MI0012209 322 X 17975810 17975892 - High
bta-mir-320a-1 MI0012211 926 8 69558096 69558177 - High
bta-mir-424 MI0012212 90 X 18242745 18242840 - High
bta-mir-450a-1 MI0012213 55 X 18236376 18236457 - High
bta-mir-542 MI0012214 92 X 18237439 18237535 - High
bta-mir-2284w MI0014497 72 X 2800919 2801014 + High
bta-mir-3431 MI0014498 105 X 34445007 34445103 - High
bta-mir-2284x MI0014499 3263 1 4315515 4315610 - Medium
bta-mir-3432-1 MI0014500 95 21 55229271 55229367 - -
bta-mir-3432-2 MI0014501 118 25 33897391 33897487 - High
hsa-let-7a-1 MI0000060 46519 chr9 94175957 94176036 + High
hsa-let-7a-2 MI0000061 46265 chr11 122146522 122146593 - High
hsa-let-7a-3 MI0000062 46706 chr22 46112749 46112822 + High
hsa-mir-18a MI0000072 8032 chr13 91350751 91350821 + High
hsa-mir-21 MI0000077 28570 chr17 59841266 59841337 + High
hsa-mir-23a MI0000079 5463 chr19 13836587 13836659 - High
hsa-mir-26a-1 MI0000083 11638 chr3 37969404 37969480 + High
hsa-mir-30a MI0000088 5468 chr6 71403551 71403621 - High
hsa-mir-99a MI0000101 1967 chr21 16539089 16539169 + High
hsa-mir-103a-2 MI0000108 15897 chr20 3917494 3917571 + High
hsa-mir-103a-1 MI0000109 15862 chr5 168560896 168560973 - High
mmu-mir-1a-1 MI0000139 20001 2 180030841 180030917 + High
mmu-mir-23b MI0000141 2389 13 63448298 63448371 + High
mmu-mir-30a MI0000144 6204 1 23311350 23311420 + High
mmu-mir-99a MI0000146 1842 16 77395824 77395888 + High
mmu-mir-126a MI0000153 6917 2 26481369 26481441 + High
mmu-mir-9-2 MI0000157 12733 13 83886933 83887004 + High
mmu-mir-133a-1 MI0000159 3209 18 10782909 10782976 - High
mmu-mir-138-2 MI0000164 1112 8 95050939 95051009 + High
hsa-mir-192 MI0000234 1383 chr11 64891137 64891246 - High
mmu-mir-204 MI0000247 259 19 22727969 22728036 + High
mmu-mir-122 MI0000256 6121 18 65381932 65381997 + High
hsa-mir-204 MI0000284 816 chr9 70809975 70810084 - High
hsa-mir-1-2 MI0000437 5211 chr18 21829004 21829088 - High
hsa-mir-23b MI0000439 4243 chr9 95085208 95085304 + High
hsa-mir-122 MI0000442 3777 chr18 58451074 58451158 + High
hsa-mir-133a-1 MI0000450 680 chr18 21825698 21825785 - High
hsa-mir-133a-2 MI0000451 684 chr20 62564912 62565013 + High
hsa-mir-138-2 MI0000455 512 chr16 56858518 56858601 + High
hsa-mir-9-1 MI0000466 2789 chr1 156420341 156420429 - High
hsa-mir-9-2 MI0000467 2776 chr5 88666853 88666939 - High
hsa-mir-9-3 MI0000468 2765 chr15 89368017 89368106 + High
hsa-mir-126 MI0000471 4188 chr9 136670602 136670686 + High
hsa-mir-138-1 MI0000476 800 chr3 44114212 44114310 + High
mmu-mir-192 MI0000551 3462 19 6314874 6314962 + High
mmu-let-7a-1 MI0000556 54921 13 48691655 48691748 - High
mmu-let-7a-2 MI0000557 54880 9 41448012 41448107 + High
mmu-mir-18a MI0000567 1228 14 115281283 115281378 + High
mmu-mir-21a MI0000569 34902 11 86474893 86474984 - High
mmu-mir-23a MI0000571 2981 8 84935147 84935221 + High
mmu-mir-26a-1 MI0000573 8928 9 118860864 118860953 + High
mmu-mir-103-1 MI0000587 16701 11 35673223 35673308 + High
mmu-mir-103-2 MI0000588 16710 2 131129972 131130057 + High
hsa-mir-1-1 MI0000651 5442 chr20 62554306 62554376 + High
mmu-mir-1a-2 MI0000652 19830 18 10785481 10785552 - High
mmu-mir-26a-2 MI0000706 8956 10 126831399 126831482 + High
mmu-mir-9-1 MI0000720 12733 3 88122905 88122993 + High
mmu-mir-9-3 MI0000721 12777 7 79155012 79155101 + High
mmu-mir-138-1 MI0000722 1194 9 122511941 122512039 + High
hsa-mir-26a-2 MI0000750 11698 chr12 57824609 57824692 - High
hsa-mir-376c MI0000776 330 chr14 101039690 101039755 + High
hsa-mir-381 MI0000789 109 chr14 101045920 101045994 + High
mmu-mir-381 MI0000798 1413 12 109693256 109693330 + High
mmu-mir-133a-2 MI0000820 3210 2 180040172 180040275 + High
rno-let-7a-1 MI0000827 3545 chr17 16417853 16417946 + High
rno-let-7a-2 MI0000828 3492 chr8 45753264 45753359 + High
rno-mir-9a-1 MI0000838 224371 chr2 187582799 187582887 + High
rno-mir-9a-3 MI0000839 224306 chr1 141229353 141229442 + High
rno-mir-9a-2 MI0000840 224368 chr2 11884671 11884757 + High
rno-mir-18a MI0000846 40 chr15 100180015 100180110 + High
rno-mir-21 MI0000850 8269 chr10 73902210 73902301 - High
rno-mir-23a MI0000852 1039 chr19 25318582 25318656 + High
rno-mir-23b MI0000853 618 chr17 823222 823318 + High
rno-mir-26a-1 MI0000857 34513 chr8 127714441 127714530 + High
rno-mir-30a MI0000870 29417 chr9 29542635 29542705 + High
rno-mir-99a MI0000883 872 chr11 16052153 16052233 + High
rno-mir-103-2 MI0000887 1247 chr3 123833671 123833756 + High
rno-mir-103-1 MI0000888 1240 chr10 20606715 20606800 + High
rno-mir-122 MI0000891 3864 chr18 60755285 60755369 + High
rno-mir-126a MI0000898 5265 chr3 4042488 4042560 + High
rno-mir-133a-1 MI0000906 20425 chr18 2052478 2052564 - High
rno-mir-138-2 MI0000911 1275 chr19 11149748 11149829 - High
rno-mir-138-1 MI0000912 1331 chr8 131731726 131731824 + High
rno-mir-192 MI0000935 35899 chr1 221634971 221635080 + High
rno-mir-204 MI0000946 1319 chr1 240403000 240403109 + High
mmu-mir-411 MI0001163 4200 12 109676609 109676690 + High
hsa-mir-451a MI0001729 5013 chr17 28861369 28861440 - High
mmu-mir-451a MI0001730 9802 11 77963996 77964067 + Medium
rno-mir-451 MI0001731 441 chr10 65291204 65291275 - High
hsa-mir-193b MI0003137 1060 chr16 14303967 14304049 + High
rno-mir-1 MI0003489 205 chr18 2054933 2055019 - High
mmu-mir-376c MI0003533 361 12 109689152 109689237 + High
rno-mir-376c MI0003543 20 chr6 133872439 133872522 + High
rno-mir-381 MI0003546 39 chr6 133876615 133876675 + High
hsa-mir-574 MI0003581 1138 chr4 38868032 38868127 + High
hsa-mir-652 MI0003667 420 chrX 110055329 110055426 + High
hsa-mir-411 MI0003675 140 chr14 101023325 101023420 + High
bta-mir-26a-2 MI0004731 21998 5 55652073 55652156 + High
bta-mir-103-1 MI0004736 1346 20 312539 312610 - High
bta-mir-16b MI0004739 1506 1 107073622 107073714 - High
bta-mir-18a MI0004740 61 12 65689560 65689630 + High
bta-mir-21 MI0004742 17881 19 10803472 10803543 + High
bta-mir-99a MI0004751 1583 1 20435343 20435423 - High
bta-mir-126 MI0004754 6131 11 104085473 104085545 + High
mmu-mir-652 MI0004965 544 X 141521996 141522093 + High
bta-mir-138-2 MI0005029 47 18 24910574 24910656 + -
bta-mir-192 MI0005035 91717 29 43114348 43114453 - High
bta-mir-23a MI0005042 466 7 11838703 11838775 + High
bta-mir-30a MI0005054 28347 9 10532171 10532237 - High
bta-let-7a-1 MI0005057 11865 8 85450397 85450476 + High
bta-mir-122 MI0005063 143 24 57588139 57588223 + High
bta-mir-23b MI0005066 1056 8 81617032 81617091 + High
bta-let-7a-2 MI0005451 11827 15 32812703 32812774 - High
bta-let-7a-3 MI0005452 11878 5 116408410 116408483 + High
bta-mir-103-2 MI0005456 1352 13 51282163 51282238 - High
bta-mir-204 MI0005462 404 8 46962508 46962603 - High
mmu-mir-193b MI0005484 237 16 13267387 13267465 + High
mmu-mir-574 MI0005518 286 5 65127661 65127738 + High
rno-mir-411 MI0006144 1559 chr6 133858849 133858924 + High
rno-mir-652 MI0006169 72 chrX 114002534 114002614 + High
mmu-mir-1b MI0006283 21 18 10785446 10785567 + High
hsa-mir-103b-1 MI0007261 0 chr5 168560904 168560965 + -
hsa-mir-103b-2 MI0007262 0 chr20 3917502 3917563 - -
bta-mir-381 MI0009821 186 21 65933708 65933782 + High
rno-mir-9b-3 MI0015426 7 chr1 141229342 141229456 - High
rno-mir-9b-1 MI0015430 8 chr2 187582790 187582897 - High
rno-mir-126b MI0015433 8 chr3 4042464 4042581 - -
rno-mir-9b-2 MI0015439 8 chr2 11884658 11884775 - High
hsa-mir-451b MI0017360 0 chr17 28861371 28861438 + Low
bta-mir-574 MI0021122 55 18 62846574 62846640 - -
bta-mir-652 MI0021123 79 X 58480886 58480983 + High
mmu-mir-21b MI0021906 10 3 29690893 29691000 + -
mmu-mir-21c MI0021932 8 8 129004629 129004706 - -
mmu-mir-451b MI0021960 4 11 77963996 77964067 - -
bta-mir-411b MI0022288 2 21 65915594 65915668 + High
bta-mir-411c MI0022292 64 21 65940125 65940198 + High
mmu-mir-126b MI0025035 10 2 26481375 26481432 - Medium
rno-mir-193b MI0030355 59 chr14 30331049 30331131 - High
mmu-mir-9b-2 MI0040624 2 13 83886940 83886995 - High
mmu-mir-9b-1 MI0040640 2 3 88122920 88122977 - High
mmu-mir-9b-3 MI0040649 2 7 79155027 79155084 - High



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