miRBase entry: 19758457

Characterization of bovine miRNAs by sequencing and bioinformatics analysis

PubMed ID 19758457
Authors Jin W, Grant JR, Stothard P, Moore SS, Guan LL
Journal BMC Mol Biol
Volume 10
Pages 90

There are 223 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
bta-mir-199a-1 MI0004758 3207 chr16 40646156 40646259 - High
bta-mir-124a-1 MI0005027 13 chr8 9221497 9221581 + -
bta-let-7b MI0005453 4232 chr5 117458606 117458686 + High
bta-mir-1-2 MI0009718 574 chr24 34928847 34928931 + -
bta-mir-1-1 MI0009719 574 chr13 55456488 55456563 - -
bta-mir-100 MI0009720 673 chr15 33539274 33539349 - High
bta-mir-101-1 MI0009721 1082 chr3 80980185 80980267 + High
bta-mir-106b MI0009724 247 chr25 37072314 37072393 + High
bta-mir-124a-2 MI0009725 13 chr14 31015073 31015183 + -
bta-mir-128-2 MI0009727 182 chr22 9796002 9796085 + -
bta-mir-129-1 MI0009728 67 chr4 93534084 93534155 + High
bta-mir-129-2 MI0009729 70 chr15 74898231 74898324 + High
bta-mir-130a MI0009730 398 chr15 82581436 82581524 + High
bta-mir-133a-2 MI0009732 327 chr24 34932166 34932252 + High
bta-mir-133a-1 MI0009733 326 chr13 55446236 55446330 - High
bta-mir-133b MI0009734 15 chr23 24357763 24357846 + -
bta-mir-138-1 MI0009741 44 chr22 14939860 14939956 + -
bta-mir-143 MI0009743 223303 chr7 63079071 63079171 + -
bta-mir-144 MI0009744 30 chr19 20923025 20923108 - High
bta-mir-152 MI0009748 219 chr19 39247030 39247115 + High
bta-mir-16a MI0009753 574 chr12 19660386 19660474 - High
bta-mir-24-1 MI0009761 551 chr8 83484370 83484437 + High
bta-mir-193b MI0009764 283 chr25 13397029 13397111 + -
bta-mir-194-2 MI0009765 4433 chr29 44018295 44018377 + High
bta-mir-197 MI0009769 111 chr3 34176846 34176926 - -
bta-mir-206 MI0009772 65 chr23 24353667 24353752 + -
bta-mir-218-1 MI0009780 65 chr6 41756487 41756596 + -
bta-mir-219-1 MI0009781 3 chr11 99257286 99257381 - -
bta-mir-223 MI0009782 722 chrX 101046347 101046454 - High
bta-mir-224 MI0009783 169 chrX 34881360 34881440 - -
bta-mir-26a-1 MI0009784 21970 chr22 11513974 11514063 + -
bta-mir-28 MI0009785 1738 chr1 79540068 79540153 - High
bta-mir-299 MI0009787 40 chr21 67841943 67842005 + High
bta-mir-29d MI0009788 302 chr16 77816279 77816366 + High
bta-mir-30f MI0009795 368 chr9 10781518 10781601 - -
bta-mir-32 MI0009796 138 chr8 100883622 100883691 - High
bta-mir-323 MI0009797 7 chr21 67843841 67843926 + -
bta-mir-324 MI0009798 26 chr19 27713361 27713449 - High
bta-mir-329b MI0009802 13 chr21 67844880 67844962 + -
bta-mir-338 MI0009805 105 chr19 52407324 52407415 + -
bta-mir-339a MI0009806 305 chr25 42489153 42489230 + -
bta-mir-340 MI0009809 252 chr7 1160917 1161011 + High
bta-mir-362 MI0009811 43 chrX 93947354 93947418 + High
bta-mir-365-2 MI0009812 137 chr19 18918387 18918497 - -
bta-mir-374b MI0009816 112 chrX 82989913 82990007 + High
bta-mir-375 MI0009817 1613 chr2 108046949 108047012 - -
bta-mir-378-1 MI0009819 4644 chr7 63343197 63343262 + High
bta-mir-382 MI0009822 30 chr21 67871251 67871326 + High
bta-mir-409a MI0009824 378 chr21 67881619 67881697 + High
bta-mir-411a MI0009826 2437 chr21 67841471 67841552 + High
bta-mir-429 MI0009829 551 chr16 52693343 52693426 - -
bta-mir-433 MI0009832 10 chr21 67707406 67707529 + -
bta-mir-451 MI0009837 80 chr19 20922863 20922933 - -
bta-mir-452 MI0009838 411 chrX 34882394 34882478 - High
bta-mir-485 MI0009842 12 chr21 67872328 67872400 + High
bta-mir-486 MI0009843 516 chr27 36501847 36501970 - -
bta-mir-494 MI0009848 22 chr21 67848049 67848133 + -
bta-mir-495 MI0009849 21 chr21 67851608 67851688 + -
bta-mir-500 MI0009851 289 chrX 93948610 93948693 + High
bta-mir-504 MI0009855 51 chrX 22201445 22201527 - -
bta-mir-505 MI0009856 48 chrX 23507268 23507357 - -
bta-mir-539 MI0009857 19 chr21 67862745 67862822 + -
bta-mir-551b MI0009864 1 chr1 100049884 100049978 - -
bta-mir-592 MI0009875 4 chr4 92442143 92442238 - -
bta-mir-874 MI0009900 48 chr7 50886238 50886313 - High
bta-mir-885 MI0009904 97 chr22 55292168 55292241 - -
bta-mir-92a-1 MI0009905 5255 chr12 66421937 66422014 + -
bta-mir-92b MI0009906 396 chr3 15638041 15638136 - -
bta-mir-9-1 MI0009912 179 chr21 21326580 21326669 + High
bta-mir-9-2 MI0009913 179 chr7 90950499 90950585 - High
bta-mir-1224 MI0010443 7 chr1 83839934 83840019 - -
bta-mir-376b MI0010444 20 chr21 67857435 67857527 + High
bta-mir-376c MI0010446 18 chr21 67856685 67856770 + High
bta-mir-7-2 MI0010462 181 chr8 79020781 79020889 - High
bta-mir-29b-1 MI0010464 359 chr4 95727243 95727323 - -
bta-mir-7-1 MI0010471 99 chr21 20048987 20049084 + -
bta-mir-1185 MI0010478 15 chr21 67859743 67859828 + High
bta-mir-181a-1 MI0010484 8643 chr16 79940482 79940591 - High
bta-mir-181b-1 MI0010485 463 chr16 79940310 79940419 - -
bta-mir-1388 MI0012206 137 chr13 54595416 54595507 + High
bta-mir-1468 MI0012207 580 chrX 102956334 102956430 + -
bta-mir-194-1 MI0012208 5679 chr16 24405220 24405316 - High
bta-mir-19b-2 MI0012209 322 chrX 18021338 18021420 - -
bta-mir-320a-1 MI0012211 926 chr8 70428971 70429052 - -
bta-mir-424 MI0012212 90 chrX 18288411 18288506 - High
bta-mir-450a-1 MI0012213 55 chrX 18282042 18282123 - -
bta-mir-542 MI0012214 92 chrX 18283105 18283201 - High
bta-mir-2284w MI0014497 72 chrX 2676325 2676420 + High
bta-mir-3431 MI0014498 105 chrX 34879430 34879526 - High
bta-mir-2284x MI0014499 3263 chr1 3605102 3605197 - -
bta-mir-3432a-1 MI0014500 95 chr21 55992009 55992105 - -
bta-mir-3432a-2 MI0014501 118 chr25 34580890 34580986 - High
hsa-let-7a-1 MI0000060 46519 chr9 94175957 94176036 + High
hsa-let-7a-2 MI0000061 46265 chr11 122146522 122146593 - High
hsa-let-7a-3 MI0000062 46706 chr22 46112749 46112822 + High
hsa-mir-18a MI0000072 8032 chr13 91350751 91350821 + High
hsa-mir-21 MI0000077 28570 chr17 59841266 59841337 + High
hsa-mir-23a MI0000079 5463 chr19 13836587 13836659 - High
hsa-mir-26a-1 MI0000083 11638 chr3 37969404 37969480 + High
hsa-mir-30a MI0000088 5468 chr6 71403551 71403621 - High
hsa-mir-99a MI0000101 1967 chr21 16539089 16539169 + High
hsa-mir-103a-2 MI0000108 15897 chr20 3917494 3917571 + High
hsa-mir-103a-1 MI0000109 15862 chr5 168560896 168560973 - High
mmu-mir-1a-1 MI0000139 20001 chr2 180389048 180389124 + High
mmu-mir-23b MI0000141 2389 chr13 63300484 63300557 + High
mmu-mir-30a MI0000144 6204 chr1 23272269 23272339 + High
mmu-mir-99a MI0000146 1842 chr16 77598936 77599000 + High
mmu-mir-126a MI0000153 6917 chr2 26591357 26591429 + High
mmu-mir-9-2 MI0000157 12733 chr13 83738814 83738885 + High
mmu-mir-133a-1 MI0000159 3209 chr18 10782909 10782976 - High
mmu-mir-138-2 MI0000164 1112 chr8 94324311 94324381 + -
hsa-mir-192 MI0000234 1383 chr11 64891137 64891246 - High
mmu-mir-204 MI0000247 259 chr19 22750605 22750672 + High
mmu-mir-122 MI0000256 6121 chr18 65248861 65248926 + High
hsa-mir-204 MI0000284 816 chr9 70809975 70810084 - High
hsa-mir-1-2 MI0000437 5211 chr18 21829004 21829088 - High
hsa-mir-23b MI0000439 4243 chr9 95085208 95085304 + -
hsa-mir-122 MI0000442 3777 chr18 58451074 58451158 + High
hsa-mir-133a-1 MI0000450 680 chr18 21825698 21825785 - High
hsa-mir-133a-2 MI0000451 684 chr20 62564912 62565013 + High
hsa-mir-138-2 MI0000455 512 chr16 56858518 56858601 + High
hsa-mir-9-1 MI0000466 2789 chr1 156420341 156420429 - High
hsa-mir-9-2 MI0000467 2776 chr5 88666853 88666939 - High
hsa-mir-9-3 MI0000468 2765 chr15 89368017 89368106 + High
hsa-mir-126 MI0000471 4188 chr9 136670602 136670686 + High
hsa-mir-138-1 MI0000476 800 chr3 44114212 44114310 + High
mmu-mir-192 MI0000551 3462 chr19 6264844 6264932 + High
mmu-let-7a-1 MI0000556 54921 chr13 48538179 48538272 - High
mmu-let-7a-2 MI0000557 54880 chr9 41536716 41536811 + High
mmu-mir-18a MI0000567 1228 chr14 115043851 115043946 + High
mmu-mir-21a MI0000569 34902 chr11 86584067 86584158 - High
mmu-mir-23a MI0000571 2981 chr8 84208518 84208592 + High
mmu-mir-26a-1 MI0000573 8928 chr9 119031796 119031885 + High
mmu-mir-103-1 MI0000587 16701 chr11 35782396 35782481 + High
mmu-mir-103-2 MI0000588 16710 chr2 131288052 131288137 + High
hsa-mir-1-1 MI0000651 5442 chr20 62554306 62554376 + High
mmu-mir-1a-2 MI0000652 19830 chr18 10785481 10785552 - High
mmu-mir-26a-2 MI0000706 8956 chr10 126995530 126995613 + High
mmu-mir-9-1 MI0000720 12733 chr3 88215598 88215686 + High
mmu-mir-9-3 MI0000721 12777 chr7 79505264 79505353 + High
mmu-mir-138-1 MI0000722 1194 chr9 122682876 122682974 + High
hsa-mir-26a-2 MI0000750 11698 chr12 57824609 57824692 - High
hsa-mir-376c MI0000776 330 chr14 101039690 101039755 + High
hsa-mir-381 MI0000789 109 chr14 101045920 101045994 + High
mmu-mir-381 MI0000798 1413 chr12 109726822 109726896 + High
mmu-mir-133a-2 MI0000820 3210 chr2 180398379 180398482 + High
rno-let-7a-1 MI0000827 3545 chr17 16417853 16417946 + High
rno-let-7a-2 MI0000828 3492 chr8 45753264 45753359 + High
rno-mir-9a-1 MI0000838 224371 chr2 187582799 187582887 + High
rno-mir-9a-3 MI0000839 224306 chr1 141229353 141229442 + High
rno-mir-9a-2 MI0000840 224368 chr2 11884671 11884757 + High
rno-mir-18a MI0000846 40 chr15 100180015 100180110 + High
rno-mir-21 MI0000850 8269 chr10 73902210 73902301 - High
rno-mir-23a MI0000852 1039 chr19 25318582 25318656 + High
rno-mir-23b MI0000853 618 chr17 823222 823318 + High
rno-mir-26a MI0000857 34513 chr8 127714441 127714530 + High
rno-mir-30a MI0000870 29417 chr9 29542635 29542705 + High
rno-mir-99a MI0000883 872 chr11 16052153 16052233 + High
rno-mir-103-2 MI0000887 1247 chr3 123833671 123833756 + High
rno-mir-103-1 MI0000888 1240 chr10 20606715 20606800 + High
rno-mir-122 MI0000891 3864 chr18 60755285 60755369 + High
rno-mir-126a MI0000898 5265 chr3 4042488 4042560 + High
rno-mir-133a MI0000906 20425 chr18 2052478 2052564 - High
rno-mir-138-2 MI0000911 1275 chr19 11149748 11149829 - High
rno-mir-138-1 MI0000912 1331 chr8 131731726 131731824 + High
rno-mir-192 MI0000935 35899 chr1 221634971 221635080 + High
rno-mir-204 MI0000946 1319 chr1 240403000 240403109 + High
mmu-mir-411 MI0001163 4200 chr12 109710175 109710256 + High
hsa-mir-451a MI0001729 5013 chr17 28861369 28861440 - -
mmu-mir-451a MI0001730 9802 chr11 78073170 78073241 + -
rno-mir-451 MI0001731 441 chr10 65291204 65291275 - High
hsa-mir-193b MI0003137 1060 chr16 14303967 14304049 + High
rno-mir-1 MI0003489 205 chr18 2054933 2055019 - -
mmu-mir-376c MI0003533 361 chr12 109722718 109722803 + High
rno-mir-376c MI0003543 20 chr6 133872439 133872522 + High
rno-mir-381 MI0003546 39 chr6 133876615 133876675 + High
hsa-mir-574 MI0003581 1138 chr4 38868032 38868127 + High
hsa-mir-652 MI0003667 420 chrX 110055329 110055426 + High
hsa-mir-411 MI0003675 140 chr14 101023325 101023420 + High
bta-mir-26a-2 MI0004731 21998 chr5 56156321 56156404 + High
bta-mir-103-1 MI0004736 1346 chr20 189696 189767 - -
bta-mir-16b MI0004739 1506 chr1 108321598 108321690 - -
bta-mir-18a MI0004740 61 chr12 66421379 66421449 + High
bta-mir-21 MI0004742 17881 chr19 11138471 11138542 + High
bta-mir-99a MI0004751 1583 chr1 19985570 19985650 - High
bta-mir-126 MI0004754 6131 chr11 104385546 104385618 + High
mmu-mir-652 MI0004965 544 chrX 142739000 142739097 + High
bta-mir-138-2 MI0005029 47 chr18 25049218 25049300 + High
bta-mir-192 MI0005035 91717 chr29 44018495 44018600 + High
bta-mir-23a MI0005042 466 chr7 13046186 13046258 - -
bta-mir-30a MI0005054 28347 chr9 10818870 10818936 - -
bta-let-7a-1 MI0005057 11865 chr8 87363854 87363933 + High
bta-mir-122 MI0005063 143 chr24 58263337 58263421 + -
bta-mir-23b MI0005066 1056 None None High
bta-let-7a-2 MI0005451 11827 chr15 33533448 33533519 - -
bta-let-7a-3 MI0005452 11878 chr5 117457806 117457879 + High
bta-mir-103-2 MI0005456 1352 chr13 51962355 51962430 - -
bta-mir-204 MI0005462 404 chr8 47411234 47411329 - -
mmu-mir-193b MI0005484 237 chr16 13449523 13449601 + High
mmu-mir-574 MI0005518 286 chr5 64970318 64970395 + High
rno-mir-411 MI0006144 1559 chr6 133858849 133858924 + High
rno-mir-652 MI0006169 72 chrX 114002534 114002614 + High
mmu-mir-1b MI0006283 21 chr18 10785446 10785567 + High
hsa-mir-103b-1 MI0007261 0 chr5 168560904 168560965 + -
hsa-mir-103b-2 MI0007262 0 chr20 3917502 3917563 - -
bta-mir-381 MI0009821 186 chr21 67861446 67861520 + High
rno-mir-9b-3 MI0015426 7 chr1 141229342 141229456 - -
rno-mir-9b-1 MI0015430 8 chr2 187582790 187582897 - -
rno-mir-126b MI0015433 8 chr3 4042464 4042581 - -
rno-mir-9b-2 MI0015439 8 chr2 11884658 11884775 - -
hsa-mir-451b MI0017360 0 chr17 28861371 28861438 + -
bta-mir-574 MI0021122 55 chr18 63382973 63383039 - -
bta-mir-652 MI0021123 79 chrX 63688261 63688358 + -
mmu-mir-21b MI0021906 10 chr3 29636744 29636851 + -
mmu-mir-21c MI0021932 8 chr8 128278148 128278225 - -
mmu-mir-451b MI0021960 4 chr11 78073170 78073241 - -
bta-mir-411b MI0022288 2 chr21 67843330 67843404 + -
bta-mir-411c MI0022292 64 chr21 67867851 67867924 + High
mmu-mir-126b MI0025035 10 chr2 26591363 26591420 - -
rno-mir-193b MI0030355 59 chr14 30331049 30331131 - High
mmu-mir-9b-2 MI0040624 2 chr13 83738821 83738876 - -
mmu-mir-9b-1 MI0040640 2 chr3 88215613 88215670 - -
mmu-mir-9b-3 MI0040649 2 chr7 79505279 79505336 - -



Comments or questions? Email mirbase@manchester.ac.uk