Stem-loop rno-mir-451

Accession

MI0001731

Description

Rattus norvegicus rno-mir-451 precursor miRNA

Literature search

172 open access papers mention rno-mir-451
(496 sentences)

Sequence

520999 reads, 634.0 reads per million, 504 experiments

uuugggaauggcgaggAAACCGUUACCAUUACUGAGUUUaguaaugguaaugguucucuugcugcucccaca
..(((((.((((((((.(((((((((((((((((....))))))))))))))))).)))))))).)))))..

Structure

uu     a        A                 A 
  uggga uggcgagg AACCGUUACCAUUACUG G
  ||||| |||||||| |||||||||||||||||  
  acccu gucguucu uugguaaugguaaugaU U
ac     c        c                 U 

Annotation confidence High

Genome context

chr10: 65291204-65291275 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-451

Mature rno-miR-451-5p

• Accession: MIMAT0001633
• Description: Rattus norvegicus rno-miR-451-5p mature miRNA
• Sequence: 17 - AAACCGUUACCAUUACUGAGUUU - 39
• Evidence: experimental ; cloned [2], Northern [2], SOLiD [3]

References

1. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


2. PubMed ID: 15891114
   Clustering and conservation patterns of human microRNAs
   "Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H"
   "Nucleic Acids Res (2005) 33:2697-2706


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249