Stem-loop bta-mir-18a

Accession

MI0004740

Description

Bos taurus bta-mir-18a precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

100 open access papers mention bta-mir-18a
(465 sentences)

Sequence

200950 reads, 54.0 reads per million, 319 experiments

uguucUAAGGUGCAUCUAGUGCAGAUAgugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGGca
((((..((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).))))..))))

Structure

    cU    U    C   U    A   -  aa u 
uguu  AAGG GCAU UAG GCAG UAg ug  g a
||||  |||| |||| ||| |||| ||| ||  | g
acGG  UUCC CGUG AUC CGUC Auc ac  u a
    UC    U    A   C    -   u  ga u 

Annotation confidence High

Genome context

12: 65689560-65689630 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from bta-mir-18a

Mature bta-miR-18a-5p

• Accession: MIMAT0003526
• Description: Bos taurus bta-miR-18a-5p mature miRNA
• Sequence: 6 - UAAGGUGCAUCUAGUGCAGAUA - 27
• Evidence: experimental ; cloned [1]

Mature bta-miR-18a-3p

• Accession: MIMAT0060930
• Description: Bos taurus bta-miR-18a-3p mature miRNA
• Sequence: 47 - ACUGCCCUAAGUGCUCCUUCUGG - 69
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43