Stem-loop bta-mir-18a

Accession

MI0004740

Description

Bos taurus bta-mir-18a precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

7 open access papers mention bta-mir-18a
(23 sentences)

Sequence

3086 reads, 61 reads per million, 68 experiments

uguucUAAGGUGCAUCUAGUGCAGAUAgugaaguagauuagcaucuacugcccuaagugcuccuucuggca
((((..((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).))))..))))

Structure

    cU    U    C   U    A   -  aa u 
uguu  AAGG GCAU UAG GCAG UAg ug  g a
||||  |||| |||| ||| |||| ||| ||  | g
acgg  uucc cgug auc cguc auc ac  u a
    uc    u    a   c    -   u  ga u 

Annotation confidence High

Genome context

chr12: 66421379-66421449 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from bta-mir-18a

Mature bta-miR-18a

• Accession: MIMAT0003526
• Description: Bos taurus bta-miR-18a mature miRNA
• Sequence: 6 - UAAGGUGCAUCUAGUGCAGAUA - 27
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43