Search results

mir-17 family in Rfam (RF00051)

Summary
This family represents the microRNA (miRNA) precursor mir-17, family, which includes mir-20, mir-91, and mir-103. miRNAs are transcribed as ~70nt precursors (modelled here) and subsequently processed by the Dicer enzyme to give a ~22nt product. In this case the mature sequence comes from the 3' arm of the precursor. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The products are thought to have regulatory roles through complementarity to mRNA. The involvement of Dicer in miRNA processing suggests a relationship with the phenomenon of RNA interference. miRNAs are numbered based on the sequence of the mature RNA. This family represents the microRNA (miRNA) precursor mir-17 imported from miRBase.
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5'

There are 234 hairpins in the mir-17 family

Name Accession RPM Chromosome Start End Strand Confidence
hsa-mir-17 MI0000071 12840 chr13 91350605 91350688 + High
hsa-mir-18a MI0000072 8032 chr13 91350751 91350821 + High
hsa-mir-20a MI0000076 6826 chr13 91351065 91351135 + High
hsa-mir-93 MI0000095 1906 chr7 100093768 100093847 - High
hsa-mir-106a MI0000113 2817 chrX 134170198 134170278 - High
mmu-mir-106a MI0000406 118 chrX 52742503 52742567 - High
mmu-mir-106b MI0000407 2806 chr5 138165737 138165818 - High
mmu-mir-18a MI0000567 1228 chr14 115043851 115043946 + High
mmu-mir-20a MI0000568 1950 chr14 115044157 115044263 + High
mmu-mir-93 MI0000581 2058 chr5 138165523 138165610 - High
rno-mir-20a MI0000638 85 chr15 100180334 100180418 + High
mmu-mir-17 MI0000687 2249 chr14 115043671 115043754 + High
hsa-mir-106b MI0000734 2518 chr7 100093993 100094074 - High
rno-mir-17-1 MI0000845 120 chr15 100179879 100179962 + High
rno-mir-18a MI0000846 40 chr15 100180015 100180110 + High
rno-mir-93 MI0000880 438 chr12 19307543 19307629 - High
rno-mir-106b MI0000889 112 chr12 19307752 19307833 - High
gga-mir-20a MI0001181 1777 chr1 148023499 148023596 - High
gga-mir-18a MI0001183 127 chr1 148023819 148023911 - High
gga-mir-17 MI0001184 961 chr1 148023974 148024058 - High
gga-mir-18b MI0001209 27 chr4 3995020 3995103 - -
gga-mir-106 MI0001210 190 chr4 3995151 3995231 - High
xla-mir-20 MI0001453 - chr8L 48822066 48822139 - -
gga-mir-20b MI0001517 396 chr4 3994839 3994923 - High
hsa-mir-18b MI0001518 1926 chrX 134170041 134170111 - High
hsa-mir-20b MI0001519 152 chrX 134169809 134169877 - High
dre-mir-17a-1 MI0001897 499 chr1 3298112 3298249 - High
dre-mir-17a-2 MI0001898 482 chr9 53436944 53437026 - High
dre-mir-20b MI0001899 922 chr14 31467167 31467260 - High
dre-mir-18a MI0001900 280 chr1 3298006 3298088 - High
dre-mir-18b MI0001901 158 chr9 53436831 53436917 - -
dre-mir-18c MI0001902 1983 chr14 31467376 31467460 - High
dre-mir-20a MI0001907 2679 chr1 3297603 3297755 - High
dre-mir-93 MI0001954 1548 chr14 100502 100575 + High
ssc-mir-106a MI0002412 20 chrX 126200183 126200263 - -
ssc-mir-20a MI0002423 736 chr11 66610513 66610583 + -
ssc-mir-18a MI0002455 46 chr11 66610195 66610286 + -
ggo-mir-17 MI0002965 - chr13 74168191 74168274 + -
ggo-mir-18a MI0002966 - chr13 74168337 74168407 + -
ggo-mir-20a MI0002968 - chr13 74168651 74168721 + -
lca-mir-17 MI0002971 - None None -
lca-mir-18 MI0002972 - None None -
lca-mir-20 MI0002974 - None None -
age-mir-17 MI0002977 - None None -
age-mir-18 MI0002978 - None None -
age-mir-20 MI0002980 - None None -
ppa-mir-17 MI0002983 - chr13 91707328 91707411 + -
ppa-mir-18 MI0002984 - chr13 91707474 91707544 + -
ppa-mir-20 MI0002986 - chr13 91707788 91707858 + -
ppy-mir-17 MI0002989 - chr13 93460030 93460113 + -
ppy-mir-18a MI0002990 - chr13 93460176 93460246 + -
ppy-mir-20a MI0002992 - chr13 93460490 93460560 + -
ptr-mir-17 MI0002995 - chr13 77006711 77006794 + -
ptr-mir-18a MI0002996 - chr13 77006857 77006927 + -
ptr-mir-20a MI0002998 - chr13 77007171 77007241 + -
mml-mir-17 MI0003001 339 chr17 73096107 73096190 + High
mml-mir-18a MI0003002 31 chr17 73096253 73096323 + High
mml-mir-20a MI0003004 502 chr17 73096567 73096637 + High
sla-mir-17 MI0003007 - None None -
sla-mir-18 MI0003008 - None None -
sla-mir-20 MI0003010 - None None -
lla-mir-17 MI0003013 - None None -
lla-mir-18 MI0003014 - None None -
lla-mir-20 MI0003016 - None None -
mne-mir-17 MI0003019 - None None -
mne-mir-18 MI0003020 - None None -
mne-mir-20 MI0003022 - None None -
ggo-mir-106b MI0003059 - chr7 77984054 77984135 + -
ggo-mir-93 MI0003060 - chr7 77984281 77984360 + -
age-mir-106b MI0003062 - None None -
age-mir-93 MI0003063 - None None -
ppa-mir-106b MI0003064 - chr7 105562802 105562883 - -
ppa-mir-93 MI0003065 - chr7 105562577 105562656 - -
ppy-mir-106b MI0003067 - chr7 9079286 9079367 - -
ppy-mir-93 MI0003068 - chr7 9079061 9079140 - -
ptr-mir-106b MI0003070 - chr7 103151247 103151328 - -
ptr-mir-93 MI0003071 - chr7 103151022 103151101 - -
mml-mir-106b MI0003073 421 chr3 125615402 125615483 - High
mml-mir-93 MI0003074 1590 chr3 125615179 125615258 - High
sla-mir-106b MI0003076 - None None -
sla-mir-93 MI0003077 - None None -
lla-mir-106b MI0003078 - None None -
lla-mir-93 MI0003079 - None None -
mne-mir-106b MI0003081 - None None -
mne-mir-93 MI0003082 - None None -
ggo-mir-106a MI0003096 - chrX 134208148 134208228 - -
age-mir-106a MI0003099 - None None -
ppa-mir-106a MI0003102 - chrX 133616492 133616572 - -
mml-mir-106a MI0003107 20 chrX 128132553 128132633 - High
ppy-mir-106a MI0003109 - chrX 133613123 133613203 - -
ptr-mir-106a MI0003112 - chrX 134038418 134038498 - -
sla-mir-106a MI0003115 - None None -
mne-mir-106a MI0003120 - None None -
fru-mir-17-1 MI0003231 - HE602547.1 13071306 13071391 + -
tni-mir-17-1 MI0003232 - 5 8188854 8188939 - -
fru-mir-18 MI0003233 - HE602547.1 13071440 13071515 + -
tni-mir-18 MI0003234 - 5 8188729 8188804 - -
fru-mir-17-2 MI0003441 - HE602535.1 14441014 14441095 + -
tni-mir-17-2 MI0003442 - 2 12891968 12892049 + -
fru-mir-20 MI0003443 - HE602535.1 14441541 14441620 + -
tni-mir-20 MI0003444 - 2 12892487 12892559 + -
mmu-mir-20b MI0003536 135 chrX 52742113 52742192 - High
rno-mir-20b MI0003554 38 chrX 140117518 140117589 - High
bta-mir-18b MI0004732 34 chrX 18021698 18021772 - High
bta-mir-18a MI0004740 61 chr12 66421379 66421449 + High
bta-mir-20a MI0004741 99 chr12 66421687 66421757 + High
xtr-mir-17 MI0004803 - chr2 120020382 120020468 - -
xtr-mir-106 MI0004822 - chr8 47198219 47198281 - -
xtr-mir-18a MI0004893 - chr2 120020254 120020340 - -
xtr-mir-93a MI0004900 - KV460378.1 107132 107204 - -
xtr-mir-93b MI0004901 - None None -
xtr-mir-20a MI0004911 - chr2 120019984 120020067 - -
xtr-mir-18b MI0004959 - chr8 47198092 47198169 - -
xtr-mir-20b MI0004961 - chr8 47197934 47198007 - -
bta-mir-106a MI0005005 46 chrX 18021857 18021937 - -
bta-mir-20b MI0005015 28 chrX 18021463 18021531 - -
bta-mir-17 MI0005031 256 chr12 66421236 66421319 + High
bta-mir-93 MI0005050 618 chr25 37072517 37072593 + High
mdo-mir-17 MI0005354 181 chr7 108468894 108468978 - High
mdo-mir-18a MI0005355 60 chr7 108468760 108468831 - High
mdo-mir-20a MI0005357 297 chr7 108468430 108468531 - High
mdo-mir-93 MI0005369 167 chr2 257689983 257690071 + -
mmu-mir-18b MI0005483 141 chrX 52742331 52742413 - High
rno-mir-17-2 MI0006131 89 chrX 140117891 140117968 - High
oan-mir-106 MI0006693 132 6 8561054 8561167 + High
oan-mir-18 MI0006694 24 6 8561213 8561342 + High
oan-mir-20b MI0006695 311 6 8561429 8561534 + High
oan-mir-20a-1 MI0006872 20 Ultra284 715098 715233 + -
oan-mir-20a-2 MI0006874 721 Ultra284 6728615 6728723 + High
oan-mir-17 MI0006960 519 Ultra284 6728095 6728179 + High
mml-mir-18b MI0007590 3 chrX 128132396 128132466 - -
mml-mir-20b MI0007591 29 chrX 128132164 128132232 - -
cfa-mir-17 MI0008050 - chr22 42478013 42478071 + -
cfa-mir-20a MI0008052 - chr22 42478462 42478520 + -
cfa-mir-106b MI0008109 - chr6 9498558 9498616 + -
cfa-mir-93 MI0008110 - chr6 9498780 9498840 + -
cfa-mir-106a MI0008173 - chrX 104896518 104896574 - -
ssc-mir-17 MI0008214 201 chr11 66610060 66610136 + -
ptr-mir-20b MI0008579 - chrX 134038030 134038097 - -
bta-mir-106b MI0009724 247 chr25 37072314 37072393 + High
cfa-mir-20b MI0010322 - chrX 104896091 104896158 - -
cfa-mir-18b MI0010323 - chrX 104896339 104896415 - -
cfa-mir-18a MI0010324 - chr22 42478138 42478229 + -
mdo-mir-106 MI0012498 15 chrX 35203046 35203114 - -
eca-mir-106b MI0012797 31 chr13 8034691 8034749 - -
eca-mir-93 MI0012804 334 chr13 8034465 8034523 - -
eca-mir-17 MI0012831 150 chr17 61792416 61792474 + -
eca-mir-18a MI0012832 9 chr17 61792556 61792616 + -
eca-mir-20a MI0012835 63 chr17 61792863 61792933 + -
eca-mir-106a MI0012942 96 chrX 106692701 106692781 - -
eca-mir-18b MI0012947 3 chrX 106692551 106692609 - -
eca-mir-20b MI0012950 63 chrX 106692311 106692379 - -
tgu-mir-20a MI0013770 - chr1 43202624 43202696 - -
tgu-mir-17a MI0013784 - chr1 43203076 43203147 - -
tgu-mir-18a MI0013815 - chr1 43202937 43203008 - -
tgu-mir-106 MI0013818 - chr4A 7273746 7273818 + -
tgu-mir-20b MI0013819 - chr4A 7274092 7274164 + -
ppy-mir-18b MI0014796 - chrX 133612966 133613036 - -
ppy-mir-20b MI0014797 - chrX 133612734 133612802 - -
pma-mir-17a MI0017014 - GL478379.1 403379 403460 + -
pma-mir-18a MI0017017 - None None -
pma-mir-18b MI0017018 - GL478379.1 403671 403761 + -
pma-mir-20a MI0017022 - GL478379.1 406609 406699 + -
pma-mir-20b MI0017023 - GL496094.1 2639 2732 + -
ssc-mir-18b MI0017985 0 chrX 126200019 126200101 - -
aca-mir-17 MI0018772 - GL343584.1 108264 108330 + -
aca-mir-18a MI0018783 - GL343584.1 108387 108482 + -
aca-mir-18b MI0018784 - GL344214.1 22462 22553 + -
aca-mir-20a MI0018812 - GL343584.1 108689 108770 + -
aca-mir-20b MI0018813 - GL344214.1 24032 24114 + -
ola-mir-18-1 MI0019417 - 3 15107452 15107557 + -
ola-mir-20a-1 MI0019418 - 3 15107783 15107891 + -
ola-mir-106a MI0019473 - 10 2001187 2001293 + -
ola-mir-20a-2 MI0019539 - 21 25693363 25693464 - -
ola-mir-18-2 MI0019541 - 21 25693655 25693746 - -
ola-mir-17 MI0019542 - 21 25694055 25694151 - -
sha-mir-93 MI0019647 - GL856864.1 887817 887966 + -
cgr-mir-106b MI0020379 1394 JH001296.1 179099 179179 - -
cgr-mir-17 MI0020419 3908 JH001979.1 109700 109777 - High
cgr-mir-18a MI0020433 385 JH001979.1 109537 109639 - High
cgr-mir-20a MI0020457 3765 JH001979.1 109227 109306 - High
cgr-mir-93 MI0020562 7651 JH001296.1 178880 178960 - High
ggo-mir-20b MI0020774 - chrX 134207730 134207842 - -
ggo-mir-18b MI0020857 - chrX 134207967 134208075 - -
ssc-mir-20b-1 MI0022124 25 chrX 126199775 126199854 - -
ssc-mir-20b-2 MI0022125 25 None None -
ccr-mir-17 MI0023342 - None None -
ccr-mir-18a MI0023350 - None None -
ccr-mir-18b MI0023351 - None None -
ccr-mir-18c MI0023352 - None None -
ccr-mir-20a MI0023367 - None None -
ccr-mir-93 MI0023421 - None None -
mdo-mir-20b MI0023938 52 chrX 35202543 35202603 - -
mdo-mir-18b MI0023939 56 chrX 35202855 35202919 - -
ipu-mir-17a MI0024524 - None None -
ipu-mir-17b MI0024525 - None None -
ipu-mir-18a MI0024538 - None None -
ipu-mir-20a MI0024566 - None None -
oar-mir-106b MI0025249 6806 chr24 36244122 36244201 + -
oar-mir-17 MI0025258 10276 chr10 66141653 66141736 + -
oar-mir-106a MI0025282 996 chrX 95476711 95476791 + -
ssa-mir-106a-1 MI0026438 - None None -
ssa-mir-106a-2 MI0026439 - None None -
ssa-mir-106b MI0026440 - None None -
ssa-mir-17-3 MI0026533 - None None -
ssa-mir-17-2 MI0026534 - None None -
ssa-mir-17-1 MI0026535 - None None -
ssa-mir-18a MI0026547 - None None -
ssa-mir-18b MI0026548 - None None -
ssa-mir-20a-1 MI0026601 - None None -
ssa-mir-20a-2 MI0026602 - None None -
ssa-mir-20a-3 MI0026603 - None None -
ssa-mir-20b MI0026604 - None None -
ssa-mir-93a-1 MI0026763 - None None -
ssa-mir-93a-2 MI0026764 - None None -
efu-mir-17 MI0028684 - JH977750.1 95455 95538 + -
efu-mir-106 MI0028872 - JH977625.1 7045231 7045313 - -
efu-mir-93 MI0028873 - JH977625.1 7045012 7045095 - -
chi-mir-106a MI0030593 - chrX 40075491 40075571 - -
chi-mir-106b MI0030594 - chr25 38750004 38750083 + -
chi-mir-17 MI0030648 - chr12 66729474 66729557 + -
chi-mir-18a MI0030660 - chr12 66729611 66729699 + -
chi-mir-18b MI0030661 - chrX 40075324 40075417 - -
chi-mir-20a MI0030686 - chr12 66729906 66730012 + -
chi-mir-20b MI0030687 - chrX 40075091 40075165 - -
chi-mir-93 MI0030841 - None None -
tch-mir-17 MI0031174 - KB320410.1 3473178 3473237 + -
tch-mir-20a MI0031232 - KB320410.1 3473624 3473682 + -
tch-mir-93 MI0031290 - KB320709.1 105392 105453 + -
oha-mir-17 MI0031372 - AZIM01002132.1 158388 158479 - -
oha-mir-18a MI0031381 - AZIM01002132.1 158255 158334 - -
oha-mir-18b MI0031382 - AZIM01002644.1 177020 177099 + -
oha-mir-20b MI0031400 - AZIM01002644.1 179551 179635 + -
oha-mir-20a MI0031410 - AZIM01002132.1 157971 158048 - -



Comments or questions? Email mirbase@manchester.ac.uk