Stem-loop cfa-mir-106a

Accession

MI0008173

Description

Canis lupus familiaris cfa-mir-106a precursor miRNA

Literature search

6 open access papers mention cfa-mir-106a
(17 sentences)

Sequence

1751 reads, 3.0 reads per million, 63 experiments

AAAGUGCUUACAGUGCAGGUAGcauucugcgaucuACUGCAAUGCAAGCACUUCUUA
.((((((((.((.(((((...(((...)))......))))).)).))))))))....

Structure

---A        A  G     ---GUA   u 
    AAGUGCUU CA UGCAG      Gca  
    |||||||| || |||||      ||| u
    UUCACGAA GU ACGUC      cgu  
AUUC        C  A     Aucuag   c 

Annotation confidence High

Genome context

X: 106756274-106756330 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-106a

Mature cfa-miR-106a-5p

• Accession: MIMAT0006749
• Description: Canis lupus familiaris cfa-miR-106a-5p mature miRNA
• Sequence: 1 - AAAGUGCUUACAGUGCAGGUAG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-106a-3p

• Accession: MIMAT0051869
• Description: Canis lupus familiaris cfa-miR-106a-3p mature miRNA
• Sequence: 36 - ACUGCAAUGCAAGCACUUCUUA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415