Stem-loop cfa-mir-18a

Accession

MI0010324

Description

Canis lupus familiaris cfa-mir-18a precursor miRNA

Literature search

6 open access papers mention cfa-mir-18a
(10 sentences)

Sequence

36467 reads, 50.0 reads per million, 80 experiments

gugcuuuuuguucUAAGGUGCAUCUAGUGCAGAUAGugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGgcauaagaaguuaugu
..(((((((((.((((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))..))).))))))))).....

Structure

---gu         u   --   U    C   U    A   -  aa u 
     gcuuuuugu cUA  AGG GCAU UAG GCAG UAG ug  g a
     ||||||||| |||  ||| |||| ||| |||| ||| ||  | g
     ugaagaaua gGU  UCC CGUG AUC CGUC Auc ac  u a
uguau         c   CU   U    A   C    -   u  ga u 

Annotation confidence High

Genome context

22: 42879387-42879478 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-18a

Mature cfa-miR-18a-5p

• Accession: MIMAT0009832
• Description: Canis lupus familiaris cfa-miR-18a-5p mature miRNA
• Sequence: 14 - UAAGGUGCAUCUAGUGCAGAUAG - 36
• Evidence: not_experimental

Mature cfa-miR-18a-3p

• Accession: MIMAT0051885
• Description: Canis lupus familiaris cfa-miR-18a-3p mature miRNA
• Sequence: 55 - ACUGCCCUAAGUGCUCCUUCUG - 76
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39