Stem-loop tni-mir-17-2

Accession

MI0003442

Description

Tetraodon nigroviridis tni-mir-17-2 precursor miRNA

Literature search

1 open access papers mention tni-mir-17-2
(17 sentences)

Sequence

3897 reads, 143.0 reads per million, 3 experiments

gucaccguaguguCAAAGUGCUUACAGUGCAGGUAguuaaaagaaaucuACUGCAGUGAAGGCACUUUcagcacuauucuga
.(((..(((((((.(((((((((.((.(((((.(((...........)))))))).)).)))))))))..)))))))..)))

Structure

g   cc       -C         A  G     G   uuaa 
 uca  guagugu  AAAGUGCUU CA UGCAG UAg    a
 |||  |||||||  ||||||||| || ||||| |||    a
 agu  uaucacg  UUUCACGGA GU ACGUC Auc    g
-   cu       ac         A  G     -   uaaa 

Annotation confidence Medium

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

2: 12891968-12892049 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from tni-mir-17-2

Mature tni-miR-17-5p

• Accession: MIMAT0002917
• Description: Tetraodon nigroviridis tni-miR-17-5p mature miRNA
• Sequence: 14 - CAAAGUGCUUACAGUGCAGGUA - 35
• Evidence: not_experimental

Mature tni-miR-17-2-3p

• Accession: MIMAT0052934
• Description: Tetraodon nigroviridis tni-miR-17-2-3p mature miRNA
• Sequence: 50 - ACUGCAGUGAAGGCACUUU - 68
• Evidence: not_experimental

References