Stem-loop tgu-mir-17a

Accession

MI0013784

Description

Taeniopygia guttata tgu-mir-17a precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

guCAAAGUGCUUACAGUGCAGGUAGugauauauagaaccuACUGCAGUGAAGGCACUUGUAGcauuauguug
((..((((((((.((.(((((...((..........))...))))).)).))))))))...)).........

Structure

---------  -CA        A  G     GUA  gaua 
         gu   AAGUGCUU CA UGCAG   Gu    u
         ||   |||||||| || |||||   ||     
         cG   UUCACGGA GU ACGUC   ca    a
guuguauua  AUG        A  G     Auc  agau 

Annotation confidence Not enough data

Genome context

chr1: 43203076-43203147 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from tgu-mir-17a

Mature tgu-miR-17a-5p

• Accession: MIMAT0017390
• Description: Taeniopygia guttata tgu-miR-17a-5p mature miRNA
• Sequence: 3 - CAAAGUGCUUACAGUGCAGGUAG - 25
• Evidence: experimental ; Illumina [2]

Mature tgu-miR-17a-3p

• Accession: MIMAT0014564
• Description: Taeniopygia guttata tgu-miR-17a-3p mature miRNA
• Sequence: 41 - ACUGCAGUGAAGGCACUUGUAG - 62
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727