Stem-loop efu-mir-93

Accession

MI0028873

Description

Eptesicus fuscus efu-mir-93 precursor miRNA

Sequence

93528 reads, 1181.0 reads per million, 8 experiments

ccugggggcuCCAAAGUGCUGUUCGUGCAGGUAGUgugauuaccugaccuACUGCUGAGCUAGCACUUCCCGAgccccagggau
(((.(((((((..((((((((((((.((((.(((.((.(.....).)))))))))))))).)))))))...))))))).)))..

Structure

--   g       -CA       -     U    G   U  g u 
  ccu ggggcuC   AAGUGCU GUUCG GCAG UAG gu a u
  ||| |||||||   ||||||| ||||| |||| ||| || | a
  ggg ccccgAG   UUCACGA CGAGU CGUC Auc ca u c
ua   a       CCC       U     -    -   -  g c 

Annotation confidence High

Genome context

JH977625.1: 7045012-7045095 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from efu-mir-93

Mature efu-miR-93-5p

• Accession: MIMAT0035165
• Description: Eptesicus fuscus efu-miR-93-5p mature miRNA
• Sequence: 11 - CCAAAGUGCUGUUCGUGCAGGUAGU - 35
• Evidence: experimental ; Illumina [1]

Mature efu-miR-93-3p

• Accession: MIMAT0058910
• Description: Eptesicus fuscus efu-miR-93-3p mature miRNA
• Sequence: 51 - ACUGCUGAGCUAGCACUUCCCGA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545