Stem-loop mdo-mir-17

Accession

MI0005354

Description

Monodelphis domestica mdo-mir-17 precursor miRNA

Sequence

11829 reads, 240.0 reads per million, 5 experiments

gucagaauaauguCAAAGUGCUUACAGUGCAGGUAGugauauguagaaucuACUGCAGUGAAGGCACUUGUAGcauuauagugac
((((..(((((((..((((((((.((.(((((.(((.............)))))))).)).))))))))...)))))))..))))

Structure

    ga       -CA        A  G     G   ugaua 
guca  auaaugu   AAGUGCUU CA UGCAG UAG     u
||||  |||||||   |||||||| || ||||| |||     g
cagu  uauuacG   UUCACGGA GU ACGUC Auc     u
    ga       AUG        A  G     -   uaaga 

Annotation confidence High

Genome context

ref|NC_077233.2|: 105836523-105836607 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from mdo-mir-17

Mature mdo-miR-17-5p

• Accession: MIMAT0004165
• Description: Monodelphis domestica mdo-miR-17-5p mature miRNA
• Sequence: 14 - CAAAGUGCUUACAGUGCAGGUAG - 36
• Evidence: experimental ; Microarray [1], PCR [1]

Mature mdo-miR-17-3p

• Accession: MIMAT0004166
• Description: Monodelphis domestica mdo-miR-17-3p mature miRNA
• Sequence: 52 - ACUGCAGUGAAGGCACUUGUAG - 73
• Evidence: experimental ; Microarray [1], PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72