Stem-loop ola-mir-18-2

Accession

MI0019541

Description

Oryzias latipes ola-mir-18-2 precursor miRNA

Sequence

ucuagugcuuaugcUAAGGUGCAUCUAGUGCAGAUAGugaaauagacuagcaccuacugcccuaagugcuccuucuggcauaaggagcuggg
.(((((.((((((((((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))..)))))))))..))))).

Structure

u     -g         --   U    C   U    A   -  aaau 
 cuagu  cuuaugcUA  AGG GCAU UAG GCAG UAG ug    a
 |||||  |||||||||  ||| |||| ||| |||| ||| ||    g
 ggucg  gaauacggu  ucc cgug auc cguc auc ac    a
g     ag         cu   u    a   c    -   c  gauc 

Annotation confidence Not enough data

Genome context

21: 25693655-25693746 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ola-mir-18-2

Mature ola-miR-18

• Accession: MIMAT0022532
• Description: Oryzias latipes ola-miR-18 mature miRNA
• Sequence: 15 - UAAGGUGCAUCUAGUGCAGAUAG - 37
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8