Accession
MI0002455
Description
Sus scrofa
ssc-mir-18a precursor miRNA
Literature search
31 open access papers mention ssc-mir-18a
(67 sentences)
(67 sentences)
Sequence
72209
reads,
55.0
reads per million, 211 experiments
gugcuuuuuguucUAAGGUGCAUCUAGUGCAGAUAgugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGgcauaagaaguuaugu
..(((((((((.((((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))..))).))))))))).....
..(((((((((.((((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))..))).))))))))).....
Structure
---gu u -- U C U A - aa u
gcuuuuugu cUA AGG GCAU UAG GCAG UAg ug g a
||||||||| ||| ||| |||| ||| |||| ||| || | g
ugaagaaua gGU UCC CGUG AUC CGUC Auc ac u a
uguau c CU U A C - u ga u
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr11: 66610195-66610286 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ssc-mir-18a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ssc-miR-18a-5p
| Accession | MIMAT0002161 |
| Description | Sus scrofa ssc-miR-18a-5p mature miRNA |
| Sequence | 14 - UAAGGUGCAUCUAGUGCAGAUA - 35 |
| Evidence |
experimental
cloned [2], Illumina [3-4] |
Mature ssc-miR-18a-3p
| Accession | MIMAT0052582 |
| Description | Sus scrofa ssc-miR-18a-3p mature miRNA |
| Sequence | 55 - ACUGCCCUAAGUGCUCCUUCUG - 76 |
| Evidence |
experimental
cloned [2], Illumina [3-4] |
References
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