Stem-loop bta-mir-18b

Accession

MI0004732

Description

Bos taurus bta-mir-18b precursor miRNA

Literature search

17 open access papers mention bta-mir-18b
(38 sentences)

Sequence

30168 reads, 11.0 reads per million, 308 experiments

cuuguguUAAGGUGCAUCUAGUGCAGUUAGugaagcagcucagaaucUACUGCCCUAAAUGCUCCUUCUGGcaca
..((((((((((.((((.(((.(((((...(((......)))......))))).))).)))).)))..)))))))

Structure

cu       --   U    C   U     ---UAG   ag 
  uguguUA  AGG GCAU UAG GCAGU      uga  c
  |||||||  ||| |||| ||| |||||      |||   
  acacGGU  UCC CGUA AUC CGUCA      acu  a
--       CU   U    A   C     Ucuaag   cg 

Annotation confidence High

Genome context

X: 17976170-17976244 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from bta-mir-18b

Mature bta-miR-18b-5p

• Accession: MIMAT0003517
• Description: Bos taurus bta-miR-18b-5p mature miRNA
• Sequence: 8 - UAAGGUGCAUCUAGUGCAGUUAG - 30
• Evidence: experimental ; cloned [1]

Mature bta-miR-18b-3p

• Accession: MIMAT0060927
• Description: Bos taurus bta-miR-18b-3p mature miRNA
• Sequence: 48 - UACUGCCCUAAAUGCUCCUUCUGG - 71
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43