Stem-loop oan-mir-20b

Accession

MI0006695

Description

Ornithorhynchus anatinus oan-mir-20b precursor miRNA

Sequence

11500 reads, 306 reads per million, 5 experiments

uggaaaucguauccugacaguacCAAAGUGCUCAUAGUGCAGGUAGuuuuuuucaauugauucuACUGUAAUGUGGGCACUUACAguacuccaggauaaagugcca
(((......(((((((..(((((..(((((((((((.(((((.(((..((........))..)))))))).)))))))))))...))))).))))))).....)))

Structure

   aaaucg       ac     -CA           G     G   uu  uuu 
ugg      uauccug  aguac   AAGUGCUCAUA UGCAG UAG  uu   c
|||      |||||||  |||||   ||||||||||| ||||| |||  ||    
acc      auaggac  ucaug   UUCACGGGUGU AUGUC Auc  ag   a
   -gugaa       -c     ACA           A     -   uu  uua 

Annotation confidence High

Genome context

6: 8561429-8561534 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from oan-mir-20b

Mature oan-miR-20b-5p

• Accession: MIMAT0006853
• Description: Ornithorhynchus anatinus oan-miR-20b-5p mature miRNA
• Sequence: 24 - CAAAGUGCUCAUAGUGCAGGUAG - 46
• Evidence: experimental ; Illumina [1]

Mature oan-miR-20b-3p

• Accession: MIMAT0006854
• Description: Ornithorhynchus anatinus oan-miR-20b-3p mature miRNA
• Sequence: 65 - ACUGUAAUGUGGGCACUUACA - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004