Stem-loop bta-mir-20a

Accession

MI0004741

Description

Bos taurus bta-mir-20a precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

176 open access papers mention bta-mir-20a
(829 sentences)

Sequence

4282050 reads, 839.0 reads per million, 320 experiments

guagcacUAAAGUGCUUAUAGUGCAGGUAGuguuuaguuaucuACUGCAUUAUGAGCACUUAAAGUacugc
((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).))))

Structure

    c   -A                 G   uguu 
guag acU  AAGUGCUUAUAGUGCAG UAG    u
|||| |||  ||||||||||||||||| |||    a
cguc UGA  UUCACGAGUAUUACGUC Auc    g
    a   AA                 -   uauu 

Annotation confidence High

Genome context

12: 65689868-65689938 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from bta-mir-20a

Mature bta-miR-20a-5p

• Accession: MIMAT0003527
• Description: Bos taurus bta-miR-20a-5p mature miRNA
• Sequence: 8 - UAAAGUGCUUAUAGUGCAGGUAG - 30
• Evidence: experimental ; cloned [1]

Mature bta-miR-20a-3p

• Accession: MIMAT0060931
• Description: Bos taurus bta-miR-20a-3p mature miRNA
• Sequence: 44 - ACUGCAUUAUGAGCACUUAAAGU - 66
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43