miRBase entry: bta-mir-20a

Stem-loop bta-mir-20a


Accession
MI0004741
Description
Bos taurus bta-mir-20a precursor miRNA mir-17
Gene
family?
RF00051; mir-17

Literature search
22 open access papers mention bta-mir-20a
(93 sentences)

Sequence

6484 reads, 99 reads per million, 70 experiments
guagcacUAAAGUGCUUAUAGUGCAGGUAGuguuuaguuaucuacugcauuaugagcacuuaaaguacugc
((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).))))

Structure
    c   -A                 G   uguu 
guag acU  AAGUGCUUAUAGUGCAG UAG    u
|||| |||  ||||||||||||||||| |||    a
cguc uga  uucacgaguauuacguc auc    g
    a   aa                 -   uauu 


Annotation confidence High
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Genome context
chr12: 66421687-66421757 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from bta-mir-20a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-20a

Accession MIMAT0003527
Description Bos taurus bta-miR-20a mature miRNA
Sequence 8 - UAAAGUGCUUAUAGUGCAGGUAG - 30
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43