Stem-loop mmu-mir-20a

Accession

MI0000568

Symbol

MGI: Mir20a

Description

Mus musculus mmu-mir-20a precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

168 open access papers mention mmu-mir-20a
(965 sentences)

Sequence

211709 reads, 1607 reads per million, 107 experiments

gugugaugugacagcuucuguagcacUAAAGUGCUUAUAGUGCAGGUAGuguguagccaucuACUGCAUUACGAGCACUUAAAGuacugccagcuguagaacuccag
.((.((.((.((((((...((((.(((.((((((((.((((((((.(((.(((....)))))))))))))).))))))))..))).)))).))))))...)))))).

Structure

g  u  u  --g      ucu    c   -A        A        G   u   u 
 ug ga gu   acagcu   guag acU  AAGUGCUU UAGUGCAG UAG gug a
 || || ||   ||||||   |||| |||  |||||||| |||||||| ||| |||  
 ac cu ca   ugucga   cguc uGA  UUCACGAG AUUACGUC Auc uac g
g  -  -  aga      --c    a   AA        C        -   -   c 

Annotation confidence Medium

Genome context

chr14: 115044157-115044263 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from mmu-mir-20a

Mature mmu-miR-20a-5p

• Accession: MIMAT0000529
• Description: Mus musculus mmu-miR-20a-5p mature miRNA
• Sequence: 27 - UAAAGUGCUUAUAGUGCAGGUAG - 49
• Evidence: experimental ; cloned [1-3], Illumina [4-5]

Mature mmu-miR-20a-3p

• Accession: MIMAT0004627
• Description: Mus musculus mmu-miR-20a-3p mature miRNA
• Sequence: 63 - ACUGCAUUACGAGCACUUAAAG - 84
• Evidence: experimental ; cloned [3], Illumina [4-5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12919684
   Embryonic stem cell-specific MicroRNAs
   "Houbaviy HB, Murray MF, Sharp PA"
   "Dev Cell (2003) 5:351-358


3. PubMed ID: 12007417
   Identification of tissue-specific microRNAs from mouse
   "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
   "Curr Biol (2002) 12:735-739


4. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


5. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009