miRBase entry: ppy-mir-106b

Stem-loop ppy-mir-106b

Accession

MI0003067

Description

Pongo pygmaeus ppy-mir-106b precursor miRNA

Sequence

ccugccggggcUAAAGUGCUGACAGUGCAGAUagugguccucuccgugcuaccgcacuguggguacuugcugcuccagcagg
(((((.(((((..(((((((.(((((((.(.((((((......))..))))).))))))).)))))))...))))).)))))

Structure

     c     -UA       G       A A    --  uc 
ccugc ggggc   AAGUGCU ACAGUGC G Uagu  gg  c
||||| |||||   ||||||| ||||||| | ||||  ||   
ggacg ccucg   uucaugg ugucacg c aucg  cc  u
     a     ucg       g       c -    ug  uc

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 9079286-9079367 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppy-mir-106b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-106b

Accession	MIMAT0002766
Description	Pongo pygmaeus ppy-miR-106b mature miRNA
Sequence	12 - UAAAGUGCUGACAGUGCAGAU - 32
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24