Stem-loop eca-mir-18b

Accession

MI0012947

Description

Equus caballus eca-mir-18b precursor miRNA

Literature search

2 open access papers mention eca-mir-18b
(4 sentences)

Sequence

5900 reads, 70.0 reads per million, 163 experiments

UAAGGUGCAUCUAGUGCAGUUAGugaagcagcuuagaaucUACUGCCCUAAAUGCCCCU
..(((.((((.(((.(((((.((................))))))).))).)))).)))

Structure

UA   U    C   U     U  ugaagca 
  AGG GCAU UAG GCAGU AG       g
  ||| |||| ||| ||||| ||        
  UCC CGUA AUC CGUCA Uc       c
--   C    A   C     -  uaagauu 

Annotation confidence High

Genome context

X: 110759033-110759091 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-18b

Mature eca-miR-18b-5p

• Accession: MIMAT0013200
• Description: Equus caballus eca-miR-18b-5p mature miRNA
• Sequence: 1 - UAAGGUGCAUCUAGUGCAGUUAG - 23
• Evidence: not_experimental

Mature eca-miR-18b-3p

• Accession: MIMAT0051482
• Description: Equus caballus eca-miR-18b-3p mature miRNA
• Sequence: 41 - UACUGCCCUAAAUGCCCCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131