Stem-loop mmu-mir-93

Accession

MI0000581

Symbol

MGI: Mir93

Description

Mus musculus mmu-mir-93 precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

104 open access papers mention mmu-mir-93
(1059 sentences)

Sequence

478845 reads, 1881 reads per million, 107 experiments

agucaugggggcucCAAAGUGCUGUUCGUGCAGGUAGuguaauuaccugaccuACUGCUGAGCUAGCACUUCCCGagcccccaggaca
.(((.(((((((((..((((((((((((.((((.(((.((.........)))))))))))))).)))))))...))))))))).))).

Structure

a   a         -CA       -     U    G   u  aau 
 guc ugggggcuc   AAGUGCU GUUCG GCAG UAG gu   u
 ||| |||||||||   ||||||| ||||| |||| ||| ||   a
 cag acccccgaG   UUCACGA CGAGU CGUC Auc ca   c
a   g         CCC       U     -    -   -  guc 

Annotation confidence Medium

Genome context

chr5: 138165523-138165610 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mmu-mir-93

Mature mmu-miR-93-5p

• Accession: MIMAT0000540
• Description: Mus musculus mmu-miR-93-5p mature miRNA
• Sequence: 15 - CAAAGUGCUGUUCGUGCAGGUAG - 37
• Evidence: experimental ; cloned [1-3], Northern [1], Illumina [4-5]

Mature mmu-miR-93-3p

• Accession: MIMAT0004636
• Description: Mus musculus mmu-miR-93-3p mature miRNA
• Sequence: 54 - ACUGCUGAGCUAGCACUUCCCG - 75
• Evidence: experimental ; cloned [3], Illumina [4-5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12919684
   Embryonic stem cell-specific MicroRNAs
   "Houbaviy HB, Murray MF, Sharp PA"
   "Dev Cell (2003) 5:351-358


3. PubMed ID: 15538371
   A pancreatic islet-specific microRNA regulates insulin secretion
   "Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M"
   "Nature (2004) 432:226-230


4. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


5. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009