Stem-loop ssa-mir-18b

Accession

MI0026548

Description

Salmo salar ssa-mir-18b precursor miRNA

Sequence

18448 reads, 124.0 reads per million, 87 experiments

UAAGGUGCAUCUAGUGCAGAUAGugaaguagaccagcaccuACUGCCCUACGUGCUCCUUCUGgca
.((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).))))......

Structure

-----U    U    C   U    A   -  aa u 
      AAGG GCAU UAG GCAG UAG ug  g a
      |||| |||| ||| |||| ||| ||  | g
      UUCC CGUG AUC CGUC Auc ac  c a
acgGUC    U    C   C    -   c  ga c 

Annotation confidence Medium

Genome context

Unknown

Mature ssa-miR-18b-5p

• Accession: MIMAT0032434
• Description: Salmo salar ssa-miR-18b-5p mature miRNA
• Sequence: 1 - UAAGGUGCAUCUAGUGCAGAUAG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-18b-3p

• Accession: MIMAT0032435
• Description: Salmo salar ssa-miR-18b-3p mature miRNA
• Sequence: 42 - ACUGCCCUACGUGCUCCUUCUG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482