miRBase entry: xtr-mir-93a

Stem-loop xtr-mir-93a


Accession
MI0004900
Description
Xenopus tropicalis xtr-mir-93a precursor miRNA


Sequence

163725 reads, 22110.0 reads per million, 4 experiments
augggcuucAAAGUGCUGUUCGUGCAGGUAGcuuaauaacagaccuacugcaugggcggcacuucccaagccc
..((((((..(((((((((((((((((.(((.((.......)).))))))))))))))))))))...))))))

Structure
au      -cA                 G   c  aa 
  gggcuu   AAGUGCUGUUCGUGCAG UAG uu  u
  ||||||   ||||||||||||||||| ||| ||  a
  cccgaa   uucacggcggguacguc auc ag  a
--      ccc                 -   c  ac 


Annotation confidence Not enough data
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Genome context
3: 144223304-144223376 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from xtr-mir-93a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xtr-miR-93a-5p

Accession MIMAT0003659
Description Xenopus tropicalis xtr-miR-93a-5p mature miRNA
Sequence 10 - AAAGUGCUGUUCGUGCAGGUAG - 31
Evidence experimental
Northern [1]

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112