Stem-loop cfa-mir-18b

Accession

MI0010323

Description

Canis lupus familiaris cfa-mir-18b precursor miRNA

Literature search

3 open access papers mention cfa-mir-18b
(3 sentences)

Sequence

8733 reads, 17.0 reads per million, 79 experiments

ccuguguUAAGGUGCAUCUAGUGCAGUUAGugaagccgcuuagaaccUACUGCCCUAAAUGCCCCUUCCGgcacagg
((((((((((((.((((.(((.(((((..((.............))..))))).))).)))).))))..))))))))

Structure

        --    U    C   U     UA  gaagc 
ccuguguU  AAGG GCAU UAG GCAGU  Gu     c
||||||||  |||| |||| ||| |||||  ||     g
ggacacgG  UUCC CGUA AUC CGUCA  ca     c
        CC    C    A   C     Uc  agauu 

Annotation confidence High

Genome context

X: 106756095-106756171 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-18b

Mature cfa-miR-18b-5p

• Accession: MIMAT0009831
• Description: Canis lupus familiaris cfa-miR-18b-5p mature miRNA
• Sequence: 8 - UAAGGUGCAUCUAGUGCAGUUAG - 30
• Evidence: not_experimental

Mature cfa-miR-18b-3p

• Accession: MIMAT0051884
• Description: Canis lupus familiaris cfa-miR-18b-3p mature miRNA
• Sequence: 48 - UACUGCCCUAAAUGCCCCUUCCG - 70
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39