miRBase entry: oha-mir-18b

Stem-loop oha-mir-18b

Accession

MI0031382

Description

Ophiophagus hannah oha-mir-18b precursor miRNA

Sequence

uuccuugugcUAAGGUGCAUCUAGUGCAGUUAGuggacuaacuuacaaucuACUGCCCUGAGUGCUCCUUCUGgcacacg
.....((((((((((.((((.(((.(((((...((..........))....))))).))).)))).)))..)))))))..

Structure

uuccu       --   U    C   U     -UAG  gacu 
     ugugcUA  AGG GCAU UAG GCAGU    ug    a
     |||||||  ||| |||| ||| |||||    ||     
     acacgGU  UCC CGUG GUC CGUCA    ac    a
---gc       CU   U    A   C     ucua  auuc

Annotation confidence Not enough data

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Genome context

AZIM01002644.1: 177020-177099 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oha-mir-18b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-18b-5p

Accession	MIMAT0036770
Description	Ophiophagus hannah oha-miR-18b-5p mature miRNA
Sequence	11 - UAAGGUGCAUCUAGUGCAGUUAG - 33
Evidence	not_experimental

Mature oha-miR-18b-3p

Accession	MIMAT0036771
Description	Ophiophagus hannah oha-miR-18b-3p mature miRNA
Sequence	52 - ACUGCCCUGAGUGCUCCUUCUG - 73
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656