Stem-loop aca-mir-17

Accession

MI0018772

Description

Anolis carolinensis aca-mir-17 precursor miRNA

Literature search

1 open access papers mention aca-mir-17
(3 sentences)

Sequence

4974 reads, 1755.0 reads per million, 2 experiments

auguCAAAGUGCUUACAGUGCAGGUAGUGauaaguagaaccuaCUGCAGUGAAGGCACUUGUAGCau
((((..((((((((.((.(((((...((..........))...))))).)).))))))))...))))

Structure

    -CA        A  G     GUA  Gaua 
augu   AAGUGCUU CA UGCAG   GU    a
||||   |||||||| || |||||   ||     
uaCG   UUCACGGA GU ACGUC   ca    g
    AUG        A  G     auc  agau 

Annotation confidence High

Genome context

GL343584.1: 108264-108330 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from aca-mir-17

Mature aca-miR-17-5p

• Accession: MIMAT0021803
• Description: Anolis carolinensis aca-miR-17-5p mature miRNA
• Sequence: 5 - CAAAGUGCUUACAGUGCAGGUAGUG - 29
• Evidence: experimental ; Illumina [1]

Mature aca-miR-17-3p

• Accession: MIMAT0021804
• Description: Anolis carolinensis aca-miR-17-3p mature miRNA
• Sequence: 44 - CUGCAGUGAAGGCACUUGUAGC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107