Stem-loop bta-mir-106a

Accession

MI0005005

Description

Bos taurus bta-mir-106a precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

98 open access papers mention bta-mir-106a
(328 sentences)

Sequence

284690 reads, 54.0 reads per million, 300 experiments

ccuuggccauguAAAAGUGCUUACAGUGCAGGUAgcuuuuugagaucUACUGCAAUGCAAGCACUUCUUacauuaccaugg
((.(((..((((((((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).))))))..))).))

Structure

  u   cc      -        A  G     G   c   u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAg uuu  
|| |||  |||||| |||||||| || ||||| ||| ||| u
gg acc  uacaUU UUCACGAA GU ACGUC AUc aga  
  u   au      C        C  A     -   u   g 

Annotation confidence High

Genome context

X: 17976329-17976409 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from bta-mir-106a

Mature bta-miR-106a-5p

• Accession: MIMAT0003784
• Description: Bos taurus bta-miR-106a-5p mature miRNA
• Sequence: 13 - AAAAGUGCUUACAGUGCAGGUA - 34
• Evidence: experimental ; cloned [1]

Mature bta-miR-106a-3p

• Accession: MIMAT0050783
• Description: Bos taurus bta-miR-106a-3p mature miRNA
• Sequence: 48 - UACUGCAAUGCAAGCACUUCUU - 69
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43