Stem-loop eca-mir-20a

Accession

MI0012835

Description

Equus caballus eca-mir-20a precursor miRNA

Literature search

11 open access papers mention eca-mir-20a
(27 sentences)

Sequence

362894 reads, 1163.0 reads per million, 199 experiments

guagcacUAAAGUGCUUAUAGUGCAGGUAGuguuuaguuaucuACUGCAUUAUGAGCACUUAAAGUacugc
((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).))))

Structure

    c   -A                 G   uguu 
guag acU  AAGUGCUUAUAGUGCAG UAG    u
|||| |||  ||||||||||||||||| |||    a
cguc UGA  UUCACGAGUAUUACGUC Auc    g
    a   AA                 -   uauu 

Annotation confidence High

Genome context

17: 61685489-61685559 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-20a

Mature eca-miR-20a-5p

• Accession: MIMAT0013088
• Description: Equus caballus eca-miR-20a-5p mature miRNA
• Sequence: 8 - UAAAGUGCUUAUAGUGCAGGUAG - 30
• Evidence: not_experimental

Mature eca-miR-20a-3p

• Accession: MIMAT0051419
• Description: Equus caballus eca-miR-20a-3p mature miRNA
• Sequence: 44 - ACUGCAUUAUGAGCACUUAAAGU - 66
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131