Stem-loop cfa-mir-20b

Accession

MI0010322

Description

Canis lupus familiaris cfa-mir-20b precursor miRNA

Literature search

3 open access papers mention cfa-mir-20b
(7 sentences)

Sequence

61110 reads, 56.0 reads per million, 78 experiments

guacCAAAGUGCUCACAGUGCAGGUAGucugggcuuuucucuACUGUAGUGUGGGCACUUCCGGuaac
.((((.(((((((((((.(((((.(((.............)))))))).)))))))))))..))))..

Structure

-g    -A           G     G   ucugg 
  uacC  AAGUGCUCACA UGCAG UAG     g
  ||||  ||||||||||| ||||| |||     c
  auGG  UUCACGGGUGU AUGUC Auc     u
ca    CC           G     -   ucuuu 

Annotation confidence High

Genome context

X: 106755847-106755914 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-20b

Mature cfa-miR-20b-5p

• Accession: MIMAT0009830
• Description: Canis lupus familiaris cfa-miR-20b-5p mature miRNA
• Sequence: 5 - CAAAGUGCUCACAGUGCAGGUAG - 27
• Evidence: not_experimental

Mature cfa-miR-20b-3p

• Accession: MIMAT0051883
• Description: Canis lupus familiaris cfa-miR-20b-3p mature miRNA
• Sequence: 43 - ACUGUAGUGUGGGCACUUCCGG - 64
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39