Stem-loop fru-mir-17-2

Accession

MI0003441

Description

Fugu rubripes fru-mir-17-2 precursor miRNA

Sequence

43161 reads, 463.0 reads per million, 12 experiments

gucaaaguaguguCAAAGUGCUUACAGUGCAGGUAguuugaugacaucuaCUGCAGUGAAGGCACUUUCAGCgcuauucuga
.(((.((((((((.(((((((((.((.(((((.(((..((....)).)))))))).)).)))))))))..)))))))).)))

Structure

g   a        -C         A  G     G   uu  a 
 uca aguagugu  AAAGUGCUU CA UGCAG UAg  ug u
 ||| ||||||||  ||||||||| || ||||| |||  ||  
 agu uuaucgCG  UUUCACGGA GU ACGUC auc  ac g
-   c        AC         A  G     -   -u  a 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042285.1|: 18583733-18583814 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-17-2

Mature fru-miR-17-5p

• Accession: MIMAT0002916
• Description: Fugu rubripes fru-miR-17-5p mature miRNA
• Sequence: 14 - CAAAGUGCUUACAGUGCAGGUA - 35
• Evidence: not_experimental

Mature fru-miR-17-2-3p

• Accession: MIMAT0052826
• Description: Fugu rubripes fru-miR-17-2-3p mature miRNA
• Sequence: 51 - CUGCAGUGAAGGCACUUUCAGC - 72
• Evidence: not_experimental

References