Stem-loop mmu-mir-18b

Accession

MI0005483

Symbol

MGI: Mir18b

Description

Mus musculus mmu-mir-18b precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

60 open access papers mention mmu-mir-18b
(145 sentences)

Sequence

7799 reads, 84 reads per million, 85 experiments

ucucuuguguUAAGGUGCAUCUAGUGCUGUUAGugaagcagcuuacaaucUACUGCCCUAAAUGCCCCUUCUcgcacaggcua
...(((((((.((((.((((.(((.(((((.(((......))).))).......)).))).)))).))))...)))))))...

Structure

ucu       --U    U    C   U  -------   U   ga 
   cuugugu   AAGG GCAU UAG GC       UGU AGu  a
   |||||||   |||| |||| ||| ||       ||| |||   
   ggacacg   UUCC CGUA AUC CG       aca ucg  g
auc       cUC    C    A   C  UCAUcua   u   ac 

Annotation confidence High

Genome context

chrX: 52742331-52742413 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from mmu-mir-18b

Mature mmu-miR-18b-5p

• Accession: MIMAT0004858
• Description: Mus musculus mmu-miR-18b-5p mature miRNA
• Sequence: 11 - UAAGGUGCAUCUAGUGCUGUUAG - 33
• Evidence: experimental ; cloned [1], Illumina [2]

Mature mmu-miR-18b-3p

• Accession: MIMAT0017270
• Description: Mus musculus mmu-miR-18b-3p mature miRNA
• Sequence: 51 - UACUGCCCUAAAUGCCCCUUCU - 72
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009