Stem-loop fru-mir-18

Accession

MI0003233

Description

Fugu rubripes fru-mir-18 precursor miRNA

Sequence

6218 reads, 82.0 reads per million, 12 experiments

uugugcUAAGGUGCAUCUAGUGCAGAUAgugaaauagacuagcaccuACUGCCCUAAGUGCUCCUUCUGgcauaag
(((((((((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))..)))))))).

Structure

-        --   U    C   U    A   -  aaau 
 uugugcUA  AGG GCAU UAG GCAG UAg ug    a
 ||||||||  ||| |||| ||| |||| ||| ||    g
 aauacgGU  UCC CGUG AUC CGUC Auc ac    a
g        CU   U    A   C    -   c  gauc 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042297.1|: 16855479-16855554 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from fru-mir-18

Mature fru-miR-18-5p

• Accession: MIMAT0002918
• Description: Fugu rubripes fru-miR-18-5p mature miRNA
• Sequence: 7 - UAAGGUGCAUCUAGUGCAGAUA - 28
• Evidence: not_experimental

Mature fru-miR-18-3p

• Accession: MIMAT0052827
• Description: Fugu rubripes fru-miR-18-3p mature miRNA
• Sequence: 48 - ACUGCCCUAAGUGCUCCUUCUG - 69
• Evidence: not_experimental

References