Stem-loop tni-mir-17-1

Accession

MI0003232

Description

Tetraodon nigroviridis tni-mir-17-1 precursor miRNA

Literature search

1 open access papers mention tni-mir-17-1
(17 sentences)

Sequence

3957 reads, 145.0 reads per million, 3 experiments

gucuguguauugcCAAAGUGCUUACAGUGCAGGUAguacuauguaacaccuaCUGCAAUGGAGGCACUUACAGCaguacucuugac
(((.(.(((((((..(((((((..((.(((((.(((.............)))))))).))..)))))))...))))))).)..)))

Structure

   -u u       -CA       UA  G     G   uacua 
guc  g guauugc   AAGUGCU  CA UGCAG UAg     u
|||  | |||||||   |||||||  || ||||| |||     g
cag  c caugaCG   UUCACGG  GU ACGUC auc     u
   uu u       ACA       AG  A     -   cacaa 

Annotation confidence Medium

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

5: 8188854-8188939 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from tni-mir-17-1

Mature tni-miR-17-5p

• Accession: MIMAT0002917
• Description: Tetraodon nigroviridis tni-miR-17-5p mature miRNA
• Sequence: 14 - CAAAGUGCUUACAGUGCAGGUA - 35
• Evidence: not_experimental

Mature tni-miR-17-1-3p

• Accession: MIMAT0052933
• Description: Tetraodon nigroviridis tni-miR-17-1-3p mature miRNA
• Sequence: 53 - CUGCAAUGGAGGCACUUACAGC - 74
• Evidence: not_experimental

References