Stem-loop dre-mir-18a

Accession

MI0001900

Description

Danio rerio dre-mir-18a precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

41 open access papers mention dre-mir-18a
(70 sentences)

Sequence

163336 reads, 550.0 reads per million, 271 experiments

ggcuuugugcUAAGGUGCAUCUAGUGCAGAUAgugaaguagacuagcaccuACUGCCCUAAGUGCUCCUUCUGgcacgagggu
..(((((((((((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))..))))))))))..

Structure

gg          --   U    C   U    A   -  aagu 
  cuuugugcUA  AGG GCAU UAG GCAG UAg ug    a
  ||||||||||  ||| |||| ||| |||| ||| ||    g
  ggagcacgGU  UCC CGUG AUC CGUC Auc ac    a
ug          CU   U    A   C    -   c  gauc 

Annotation confidence High

Genome context

chr1: 3298006-3298088 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from dre-mir-18a

Mature dre-miR-18a-5p

• Accession: MIMAT0001779
• Description: Danio rerio dre-miR-18a-5p mature miRNA
• Sequence: 11 - UAAGGUGCAUCUAGUGCAGAUA - 32
• Evidence: experimental ; cloned [1]

Mature dre-miR-18a-3p

• Accession: MIMAT0060867
• Description: Danio rerio dre-miR-18a-3p mature miRNA
• Sequence: 52 - ACUGCCCUAAGUGCUCCUUCUG - 73
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293