Stem-loop tni-mir-20a

Accession

MI0003444

Description

Tetraodon nigroviridis tni-mir-20a precursor miRNA

Sequence

2284 reads, 84.0 reads per million, 3 experiments

gcaguauUAAAGUGCUUAUAGUGCAGGUAGuuuucucagggucuACUGCAGUAUGAGCACUUCUAGUacuucu
..((((((((((((((((((.(((((.(((............)))))))).))))))))))).)))))))...

Structure

-gc       -           G     G   uuuuc 
   aguauUA AAGUGCUUAUA UGCAG UAG     u
   ||||||| ||||||||||| ||||| |||      
   ucaUGAU UUCACGAGUAU ACGUC Auc     c
ucu       C           G     -   uggga 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

2: 12892487-12892559 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from tni-mir-20a

Mature tni-miR-20a-5p

• Accession: MIMAT0003084
• Description: Tetraodon nigroviridis tni-miR-20a-5p mature miRNA
• Sequence: 8 - UAAAGUGCUUAUAGUGCAGGUAG - 30
• Evidence: not_experimental

Mature tni-miR-20a-3p

• Accession: MIMAT0052982
• Description: Tetraodon nigroviridis tni-miR-20a-3p mature miRNA
• Sequence: 45 - ACUGCAGUAUGAGCACUUCUAGU - 67
• Evidence: not_experimental

References