Stem-loop bta-mir-20b

Accession

MI0005015

Description

Bos taurus bta-mir-20b precursor miRNA

Literature search

10 open access papers mention bta-mir-20b
(20 sentences)

Sequence

728 reads, 28 reads per million, 57 experiments

aguacCAAAGUGCUCACAGUGCAGGUAguuuuggcagcgcucuacuguagugugggcacuuccaguacu
(((((..(((((((((((.(((((.(((....(((...))))))))))).)))))))))))...)))))

Structure

     -CA           G     G   uuuu   a 
aguac   AAGUGCUCACA UGCAG UAg    ggc  
|||||   ||||||||||| ||||| |||    ||| g
ucaug   uucacgggugu auguc auc    ucg  
     acc           g     -   ----   c 

Annotation confidence Not enough data

Genome context

chrX: 18021463-18021531 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from bta-mir-20b

Mature bta-miR-20b

• Accession: MIMAT0003796
• Description: Bos taurus bta-miR-20b mature miRNA
• Sequence: 6 - CAAAGUGCUCACAGUGCAGGUA - 27
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43