Stem-loop bta-mir-20b

Accession

MI0005015

Description

Bos taurus bta-mir-20b precursor miRNA

Literature search

63 open access papers mention bta-mir-20b
(255 sentences)

Sequence

327200 reads, 67.0 reads per million, 283 experiments

aguacCAAAGUGCUCACAGUGCAGGUAguuuuggcagcgcucuACUGUAGUGUGGGCACUUCCAGUacu
(((((..(((((((((((.(((((.(((....(((...))))))))))).)))))))))))...)))))

Structure

     -CA           G     G   uuuu   a 
aguac   AAGUGCUCACA UGCAG UAg    ggc  
|||||   ||||||||||| ||||| |||    ||| g
ucaUG   UUCACGGGUGU AUGUC Auc    ucg  
     ACC           G     -   ----   c 

Annotation confidence High

Genome context

X: 17975935-17976003 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from bta-mir-20b

Mature bta-miR-20b-5p

• Accession: MIMAT0003796
• Description: Bos taurus bta-miR-20b-5p mature miRNA
• Sequence: 6 - CAAAGUGCUCACAGUGCAGGUA - 27
• Evidence: experimental ; cloned [1]

Mature bta-miR-20b-3p

• Accession: MIMAT0050786
• Description: Bos taurus bta-miR-20b-3p mature miRNA
• Sequence: 44 - ACUGUAGUGUGGGCACUUCCAGU - 66
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43