Stem-loop bta-mir-17

Accession

MI0005031

Description

Bos taurus bta-mir-17 precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

31 open access papers mention bta-mir-17
(157 sentences)

Sequence

12126 reads, 256 reads per million, 72 experiments

gucagaauaauguCAAAGUGCUUACAGUGCAGGUAGUgauaugugcaucuACUGCAGUGAAGGCACUUGUagcauuauggugac
((((..(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))..))))

Structure

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 

Annotation confidence High

Genome context

chr12: 66421236-66421319 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from bta-mir-17

Mature bta-miR-17-5p

• Accession: MIMAT0003815
• Description: Bos taurus bta-miR-17-5p mature miRNA
• Sequence: 14 - CAAAGUGCUUACAGUGCAGGUAGU - 37
• Evidence: experimental ; cloned [1-2]

Mature bta-miR-17-3p

• Accession: MIMAT0003816
• Description: Bos taurus bta-miR-17-3p mature miRNA
• Sequence: 51 - ACUGCAGUGAAGGCACUUGU - 70
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988