miRBase entry: bta-mir-17

Stem-loop bta-mir-17


Accession
MI0005031
Description
Bos taurus bta-mir-17 precursor miRNA mir-17
Gene
family?
RF00051; mir-17

Literature search
31 open access papers mention bta-mir-17
(157 sentences)

Sequence

12126 reads, 256 reads per million, 72 experiments
gucagaauaauguCAAAGUGCUUACAGUGCAGGUAGUgauaugugcaucuACUGCAGUGAAGGCACUUGUagcauuauggugac
((((..(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))..))))

Structure
    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 


Annotation confidence High
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Genome context
chr12: 66421236-66421319 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from bta-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-17-5p

Accession MIMAT0003815
Description Bos taurus bta-miR-17-5p mature miRNA
Sequence 14 - CAAAGUGCUUACAGUGCAGGUAGU - 37
Evidence experimental
cloned [1-2]

Mature bta-miR-17-3p

Accession MIMAT0003816
Description Bos taurus bta-miR-17-3p mature miRNA
Sequence 51 - ACUGCAGUGAAGGCACUUGU - 70
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988