Stem-loop tgu-mir-20b

Accession

MI0013819

Description

Taeniopygia guttata tgu-mir-20b precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

cuagcaguauCAAAGUGCUCAUAGUGCAGGUAGcuuggaaauggaccuACUGUAAUGUGGGCACUUACAguac
......((((..(((((((((((.(((((.(((.((.......)).)))))))).)))))))))))...))))

Structure

cuagca    -CA           G     G   c  gg 
      guau   AAGUGCUCAUA UGCAG UAG uu  a
      ||||   ||||||||||| ||||| ||| ||  a
      caug   UUCACGGGUGU AUGUC Auc ag  a
------    ACA           A     -   c  gu 

Annotation confidence Not enough data

Genome context

chr4A: 7274092-7274164 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from tgu-mir-20b

Mature tgu-miR-20b-5p

• Accession: MIMAT0014591
• Description: Taeniopygia guttata tgu-miR-20b-5p mature miRNA
• Sequence: 11 - CAAAGUGCUCAUAGUGCAGGUAG - 33
• Evidence: experimental ; 454 [1], Illumina [2]

Mature tgu-miR-20b-3p

• Accession: MIMAT0027017
• Description: Taeniopygia guttata tgu-miR-20b-3p mature miRNA
• Sequence: 49 - ACUGUAAUGUGGGCACUUACA - 69
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727