Stem-loop ccr-mir-18b

Accession

MI0023351

Description

Cyprinus carpio ccr-mir-18b precursor miRNA

Sequence

3375 reads, 22.0 reads per million, 30 experiments

aacuacugcuuaugcUAAGGUGCAUUUAGUGCAGAUAGugaaauagacuagcaccuaCUGCUCUAAGUGCCCCUUCUGGCauaaggggcuggcaa
..(((((.((((((((((((.((((((((.((((.(((((...........)).))))))).)))))))).)))..))))))))).)).)))...

Structure

-aa   -  g         --   U        U    A   -  aaau 
   cua cu cuuaugcUA  AGG GCAUUUAG GCAG UAG ug    a
   ||| || |||||||||  ||| |||||||| |||| ||| ||    g
   ggu gg gaauaCGGU  UCC CGUGAAUC CGUC auc ac    a
aac   c  g         CU   C        U    -   c  gauc 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-18b-5p

• Accession: MIMAT0026247
• Description: Cyprinus carpio ccr-miR-18b-5p mature miRNA
• Sequence: 16 - UAAGGUGCAUUUAGUGCAGAUAG - 38
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-18b-3p

• Accession: MIMAT0058293
• Description: Cyprinus carpio ccr-miR-18b-3p mature miRNA
• Sequence: 58 - CUGCUCUAAGUGCCCCUUCUGGC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925