Stem-loop ssc-mir-18b

Accession

MI0017985

Description

Sus scrofa ssc-mir-18b precursor miRNA

Literature search

12 open access papers mention ssc-mir-18b
(22 sentences)

Sequence

24931 reads, 13.0 reads per million, 201 experiments

ucucuuguguUAAGGUGCAUCUAGUGCAGUUAGugaagcagcuuagaaucUACUGCCCUAAAUGCCCCUUCUggcacaggcug
...((((((((((((.((((.(((.(((((.((................))))))).))).)))).)))..)))))))))...

Structure

ucu         --   U    C   U     U  ugaagca 
   cuuguguUA  AGG GCAU UAG GCAGU AG       g
   |||||||||  ||| |||| ||| ||||| ||        
   ggacacggU  UCC CGUA AUC CGUCA Uc       c
guc         CU   C    A   C     -  uaagauu 

Annotation confidence Medium

Genome context

chrX: 126200019-126200101 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ssc-mir-18b

Mature ssc-miR-18b-5p

• Accession: MIMAT0020585
• Description: Sus scrofa ssc-miR-18b-5p mature miRNA
• Sequence: 11 - UAAGGUGCAUCUAGUGCAGUUAG - 33
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-18b-3p

• Accession: MIMAT0052666
• Description: Sus scrofa ssc-miR-18b-3p mature miRNA
• Sequence: 51 - UACUGCCCUAAAUGCCCCUUCU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328