Stem-loop ssa-mir-93a-1

Accession

MI0026763

Description

Salmo salar ssa-mir-93a-1 precursor miRNA

Literature search

1 open access papers mention ssa-mir-93a-1
(9 sentences)

Sequence

167543 reads, 1165.0 reads per million, 87 experiments

AAAAGUGCUGUUUGUGCAGGUAGAuaaacucaucagaccuACUGCAAAACCAGCACUUCCUG
..((((((((.((.(((((.(((...............)))))))).)).))))))))....

Structure

--AA        U  G     G   Auaaac 
    AAGUGCUG UU UGCAG UAG      u
    |||||||| || ||||| |||      c
    UUCACGAC AA ACGUC Auc      a
GUCC        C  A     -   cagacu 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-93a-5p

• Accession: MIMAT0032713
• Description: Salmo salar ssa-miR-93a-5p mature miRNA
• Sequence: 1 - AAAAGUGCUGUUUGUGCAGGUAGA - 24
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-93a-3p

• Accession: MIMAT0032714
• Description: Salmo salar ssa-miR-93a-3p mature miRNA
• Sequence: 41 - ACUGCAAAACCAGCACUUCCUG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482