Stem-loop dre-mir-93

Accession

MI0001954

Description

Danio rerio dre-mir-93 precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

38 open access papers mention dre-mir-93
(65 sentences)

Sequence

518404 reads, 1265.0 reads per million, 272 experiments

guguguguuAAAAGUGCUGUUUGUGCAGGUAguguguuuccucuACUGUAGGAGCAGCACUUCACaacacacac
(((((((((..(((((((((((.(((((.(((.(......).)))))))).)))))))))))...)))))))))

Structure

         -AA           G     G   u ug 
guguguguu   AAGUGCUGUUU UGCAG UAg g  u
|||||||||   ||||||||||| ||||| ||| |   
cacacacaa   UUCACGACGAG AUGUC Auc c  u
         CAC           G     -   u cu 

Annotation confidence High

Genome context

chr14: 100502-100575 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-93

Mature dre-miR-93-5p

• Accession: MIMAT0001810
• Description: Danio rerio dre-miR-93-5p mature miRNA
• Sequence: 10 - AAAAGUGCUGUUUGUGCAGGUA - 31
• Evidence: experimental ; cloned [1]

Mature dre-miR-93-3p

• Accession: MIMAT0060881
• Description: Danio rerio dre-miR-93-3p mature miRNA
• Sequence: 45 - ACUGUAGGAGCAGCACUUCAC - 65
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293