miRBase entry: dre-mir-93

Stem-loop dre-mir-93

Accession

MI0001954

Description

Danio rerio dre-mir-93 precursor miRNA mir-17

Gene
family?

RF00051; mir-17

Sequence

39864 reads, 1548 reads per million, 11 experiments

guguguguuAAAAGUGCUGUUUGUGCAGGUAguguguuuccucuacuguaggagcagcacuucacaacacacac
(((((((((..(((((((((((.(((((.(((.(......).)))))))).)))))))))))...)))))))))

Structure

         -AA           G     G   u ug 
guguguguu   AAGUGCUGUUU UGCAG UAg g  u
|||||||||   ||||||||||| ||||| ||| |   
cacacacaa   uucacgacgag auguc auc c  u
         cac           g     -   u cu

Annotation confidence High

Do you think this miRNA is real?

Genome context

chr14: 100502-100575 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-93

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-93

Accession	MIMAT0001810
Description	Danio rerio dre-miR-93 mature miRNA
Sequence	10 - AAAAGUGCUGUUUGUGCAGGUA - 31
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293