Stem-loop ptr-mir-93

Accession

MI0003071

Description

Pan troglodytes ptr-mir-93 precursor miRNA

Literature search

6 open access papers mention ptr-mir-93
(137 sentences)

Sequence

7777 reads, 116.0 reads per million, 24 experiments

cugggggcucCAAAGUGCUGUUCGUGCAGGUAGUgugauuacccgaccuACUGCUGAGCUAGCACUUCCCGAgcccccgg
((((((((((..((((((((((((.((((.(((.((.........)))))))))))))).)))))))...))))))))))

Structure

          -CA       -     U    G   U  gau 
cugggggcuc   AAGUGCU GUUCG GCAG UAG gu   u
||||||||||   ||||||| ||||| |||| ||| ||   a
ggcccccgAG   UUCACGA CGAGU CGUC Auc ca   c
          CCC       U     -    -   -  gcc 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 103151022-103151101 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-mir-93

Mature ptr-miR-93-5p

• Accession: MIMAT0002770
• Description: Pan troglodytes ptr-miR-93-5p mature miRNA
• Sequence: 11 - CAAAGUGCUGUUCGUGCAGGUAGU - 34
• Evidence: not_experimental

Mature ptr-miR-93-3p

• Accession: MIMAT0052251
• Description: Pan troglodytes ptr-miR-93-3p mature miRNA
• Sequence: 50 - ACUGCUGAGCUAGCACUUCCCGA - 72
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24