Stem-loop eca-mir-93

Accession

MI0012804

Description

Equus caballus eca-mir-93 precursor miRNA

Literature search

11 open access papers mention eca-mir-93
(24 sentences)

Sequence

991277 reads, 1879.0 reads per million, 197 experiments

CAAAGUGCUGUUCGUGCAGGUAGUGugauuaccugaccuACUGCUGAGCUAGCACUUCC
..((((((((((((.((((.(((.((.(.....).)))))))))))))).)))))))..

Structure

CA       -     U    G   U  g u 
  AAGUGCU GUUCG GCAG UAG Gu a u
  ||||||| ||||| |||| ||| || | a
  UUCACGA CGAGU CGUC Auc ca u c
CC       U     -    -   -  g c 

Annotation confidence High

Genome context

13: 8115133-8115191 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-93

Mature eca-miR-93-5p

• Accession: MIMAT0013060
• Description: Equus caballus eca-miR-93-5p mature miRNA
• Sequence: 1 - CAAAGUGCUGUUCGUGCAGGUAGUG - 25
• Evidence: not_experimental

Mature eca-miR-93-3p

• Accession: MIMAT0051400
• Description: Equus caballus eca-miR-93-3p mature miRNA
• Sequence: 40 - ACUGCUGAGCUAGCACUUCC - 59
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131