Stem-loop cfa-mir-106b

Accession

MI0008109

Description

Canis lupus familiaris cfa-mir-106b precursor miRNA

Literature search

4 open access papers mention cfa-mir-106b
(4 sentences)

Sequence

660565 reads, 578.0 reads per million, 82 experiments

UAAAGUGCUGACAGUGCAGAUAgcgguccuccgugcuaCCGCACUGUGGGUACUUGCUG
..(((((((.(((((((.(.(((((........)))))).))))))).)))))))....

Structure

--UA       G       A A     guc 
    AAGUGCU ACAGUGC G UAgcg   c
    ||||||| ||||||| | |||||    
    UUCAUGG UGUCACG C aucgu   u
GUCG       G       C -     gcc 

Annotation confidence High

Genome context

6: 9435559-9435617 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-106b

Mature cfa-miR-106b-5p

• Accession: MIMAT0006695
• Description: Canis lupus familiaris cfa-miR-106b-5p mature miRNA
• Sequence: 1 - UAAAGUGCUGACAGUGCAGAUA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-106b-3p

• Accession: MIMAT0051815
• Description: Canis lupus familiaris cfa-miR-106b-3p mature miRNA
• Sequence: 39 - CCGCACUGUGGGUACUUGCUG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415