Stem-loop bta-mir-106b

Accession

MI0009724

Description

Bos taurus bta-mir-106b precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

115 open access papers mention bta-mir-106b
(336 sentences)

Sequence

3542331 reads, 977.0 reads per million, 320 experiments

ccugccggggcUAAAGUGCUGACAGUGCAGAUAgugguccugugugcuaCCGCACUGUGGGUACUUGCUGCuccggcagg
(((((((((((..(((((((.(((((((.(.(((((........)))))).))))))).)))))))...)))))))))))

Structure

           -UA       G       A A     guc 
ccugccggggc   AAGUGCU ACAGUGC G UAgug   c
|||||||||||   ||||||| ||||||| | |||||    
ggacggccuCG   UUCAUGG UGUCACG C aucgu   u
           UCG       G       C -     gug 

Annotation confidence High

Genome context

25: 36355563-36355642 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-106b

Mature bta-miR-106b-5p

• Accession: MIMAT0009218
• Description: Bos taurus bta-miR-106b-5p mature miRNA
• Sequence: 12 - UAAAGUGCUGACAGUGCAGAUA - 33
• Evidence: experimental ; cloned [2]

Mature bta-miR-106b-3p

• Accession: MIMAT0060978
• Description: Bos taurus bta-miR-106b-3p mature miRNA
• Sequence: 50 - CCGCACUGUGGGUACUUGCUGC - 71
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125