Stem-loop bta-mir-106b

Accession

MI0009724

Description

Bos taurus bta-mir-106b precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

13 open access papers mention bta-mir-106b
(22 sentences)

Sequence

18588 reads, 247 reads per million, 74 experiments

ccugccggggcUAAAGUGCUGACAGUGCAGAUagugguccugugugcuaccgcacuguggguacuugcugcuccggcagg
(((((((((((..(((((((.(((((((.(.(((((........)))))).))))))).)))))))...)))))))))))

Structure

           -UA       G       A A     guc 
ccugccggggc   AAGUGCU ACAGUGC G Uagug   c
|||||||||||   ||||||| ||||||| | |||||    
ggacggccucg   uucaugg ugucacg c aucgu   u
           ucg       g       c -     gug 

Annotation confidence High

Genome context

chr25: 37072314-37072393 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-106b

Mature bta-miR-106b

• Accession: MIMAT0009218
• Description: Bos taurus bta-miR-106b mature miRNA
• Sequence: 12 - UAAAGUGCUGACAGUGCAGAU - 32
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125