Stem-loop fru-mir-17-1

Accession

MI0003231

Description

Fugu rubripes fru-mir-17-1 precursor miRNA

Sequence

43371 reads, 466.0 reads per million, 12 experiments

gucuguguauugcCAAAGUGCUUACAGUGCAGGUAguucuaugugacaccuaCUGCAAUGGAGGCACUUACAGCaguacucuugac
(((.(.(((((((..(((((((..((.(((((.(((.((.....))...)))))))).))..)))))))...))))))).)..)))

Structure

   -u u       -CA       UA  G     G   --u  u 
guc  g guauugc   AAGUGCU  CA UGCAG UAg   uc a
|||  | |||||||   |||||||  || ||||| |||   || u
cag  c caugaCG   UUCACGG  GU ACGUC auc   ag g
   uu u       ACA       AG  A     -   cac  u 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042297.1|: 16855345-16855430 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from fru-mir-17-1

Mature fru-miR-17-5p

• Accession: MIMAT0002916
• Description: Fugu rubripes fru-miR-17-5p mature miRNA
• Sequence: 14 - CAAAGUGCUUACAGUGCAGGUA - 35
• Evidence: not_experimental

Mature fru-miR-17-1-3p

• Accession: MIMAT0052825
• Description: Fugu rubripes fru-miR-17-1-3p mature miRNA
• Sequence: 53 - CUGCAAUGGAGGCACUUACAGC - 74
• Evidence: not_experimental

References